From nobody Mon Jul 31 14:36:36 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RF15r5Fnwz4qBLJ; Mon, 31 Jul 2023 14:36:38 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RF15d4P2rz48jW; Mon, 31 Jul 2023 14:36:37 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690814197; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=RZIYErS4w0l+oCbvWVdVdXjt8UDpZKT2nFX4CsanwPA=; b=ug/Uju59kaaCdIbvyaCbT5bSvTWCg2vEsmO/NZFslD7oH42BUOM0ifptUUJvUrVdiTk5lJ +BJIEKLLOsCSA0EP5kg334YPt7sCI05S1ftzZyw9YsCrqWE3xYlAYBHBfuHtdA8yqt8m0o 0EbPEqj3VyvuLJ5H38A7RVhsnTa+fdwB3vUQwOMXiMEMp+vyD4UBQocV++gJsj7uniMD5O Od5m9jxvhcEQdxtHC2TnGH9dzk9K2cvJTz4Jw/JSEC42SqUtuW0rotYbIPSVth7OHl+h2b Hb+WZV5fin0xCqSf+HA+Dhd01i63eMJQ/XlOYxqEuwckz6q84cBLBWpbCOaojw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690814197; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=RZIYErS4w0l+oCbvWVdVdXjt8UDpZKT2nFX4CsanwPA=; b=Kad5VwtM5MjaJ1mnEKGedpxv71Ya1E62kIiiqxjxl2qoc/zuEphHoLX5Ffmt+iAiMvYE8j PiNEMtAoJXu56j8y2/IwPA3HI4RAUNVm56ZWTkct2b3w/BgdyevALdgFnwYUFiBOImCBAz syIZ51h/NUULcBmi3339MnyqNOLLWU+OmGzO2I3TSHCmQfj0MPZFnIIrATBXxLY3NEFrQ6 NrhwRKOOu6VNAny9sZh7bMYRpZkI3UbJ4Dcbf/OOC2Djvdk8S9ntlc/yUiGs9qcZT//iY1 lBpFr05rZdaVP9gJ+ybgWkdeaGdl9O0w+0HiS694UEmLnv/jWHfY2HYfO7vTRA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690814197; a=rsa-sha256; cv=none; b=e627tRWkDeZMWKdTh7I+zQQdIFa/fj5wzeuAgJ/wkErwpLDa7g/ldJ2EWUVuEvsl7ZSs5N WOK9l2jTWg63gTnGzbS8y7ipRoZLUkiSxXy92qE36fCWrQ0bf9jN1mYAaTDqW5vhMiy7NA KbsfyLEuwK6wdqEiJnNnFqyG17XelPgXcJ3P/w3gVy3zGVLQr12NCRhjJHaRFBvL7qenum l21xa1970aRqViMi3CMg+Fu4Pn+wYNIdmmMVrga78lP2fYCRhE19G1tOYLMzF32YQRUbb5 YbwDZJYaahdgEl4926pO9sayUAGYFhC6R0E1sTnzxRHfwUcwHq5M/MnZl7TAfw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4RF15d04P1z10Pt; Mon, 31 Jul 2023 14:36:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 36VEaaxv059353; Mon, 31 Jul 2023 14:36:36 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 36VEaaq2059352; Mon, 31 Jul 2023 14:36:36 GMT (envelope-from git) Date: Mon, 31 Jul 2023 14:36:36 GMT Message-Id: <202307311436.36VEaaq2059352@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 3a654ece10c9 - main - biology/rna-seq: Add biology/star dep to metaport List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3a654ece10c9a22d945dc6be2bcd76e484c9eb8d Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=3a654ece10c9a22d945dc6be2bcd76e484c9eb8d commit 3a654ece10c9a22d945dc6be2bcd76e484c9eb8d Author: Jason W. Bacon AuthorDate: 2023-07-31 14:36:06 +0000 Commit: Jason W. Bacon CommitDate: 2023-07-31 14:36:06 +0000 biology/rna-seq: Add biology/star dep to metaport --- biology/rna-seq/Makefile | 3 ++- biology/rna-seq/distinfo | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile index 3cf8374e4b07..61a68e7a6c0c 100644 --- a/biology/rna-seq/Makefile +++ b/biology/rna-seq/Makefile @@ -1,5 +1,5 @@ PORTNAME= rna-seq -DISTVERSION= 0.1.3 +DISTVERSION= 0.1.4 CATEGORIES= biology python MASTER_SITES= # empty @@ -17,6 +17,7 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ gffread>0:biology/gffread \ kallisto>0:biology/kallisto \ hisat2>0:biology/hisat2 \ + rna-STAR>0:biology/star \ samtools>0:biology/samtools \ fasda>0:biology/fasda \ webbrowser>0:www/webbrowser \ diff --git a/biology/rna-seq/distinfo b/biology/rna-seq/distinfo index 8a8b6583b713..15d7e7d47e86 100644 --- a/biology/rna-seq/distinfo +++ b/biology/rna-seq/distinfo @@ -1 +1 @@ -TIMESTAMP = 1690554702 +TIMESTAMP = 1690813968