From nobody Fri Jul 28 14:35:54 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RC9DB6bC1z4pqFZ; Fri, 28 Jul 2023 14:35:54 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RC9DB401Nz3vJf; Fri, 28 Jul 2023 14:35:54 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690554954; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=EPOJhbi5Dh3ivz+Puxn7s+s9jS6rOWVuBFsBk/ykE7Q=; b=k910stq8OOGCu6IvmNrtM7YdmqgkzoxEF++y5DewbcKYcSzjuzxWOAvYz3HMKimUguGzvN N9RHKoJeYS3ES8/O4INRp0VELD/jtDuu65XL12ymdemUcd3d7E+C3QIKwvYaZqQD9d/+R8 pWml4HBxjpLUKzLB5I2W1SXuFMjPaOIFYtoTU3e9YCyRuIki/pdqWsjwAmqlhIN9ACreVl GrAIqR3NrUIQaOn38g/NEKaiothhfFdcK7Kx0dGxZXskNqzD4vLikl9cYBhjM+XrcsoWs0 L+0uWNRsyVL42lJm+j4yHTVQRXWNvRi0Nz6PS6jhrJVKal2VbXNKuQvmELIvAQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690554954; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=EPOJhbi5Dh3ivz+Puxn7s+s9jS6rOWVuBFsBk/ykE7Q=; b=kEIrwnN9HcODNbIFCPtKp5vDOJXiR8alR5fWGsv+8neq9swD6ye6fj8vvcuhhGuvhGo+WR fdfALUw4kB+WZ3JHmJyT8fQBbesJ2pOMBnvwyGwoN7CVtAMOgZTwhsuZfHmJVNKEr5JELq GTVGgU/AMAaSl0vJveRW0l7hOugNXWyTc5KOnXeOZt0kNpFEDg+m/kFhyCxQfVRgbMEwOR 5q28tuOv0jq7jO21Dl+7OPLq1k+e4QQRwBoQXiYKrVGMjJPGFgH3D3HvmzVJFMaD+UWL32 nhoRPdgedlPGYJF365it6w9zx721giir/fr4ciEaeUDt5cthtgmHg5+GXQq/vA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690554954; a=rsa-sha256; cv=none; b=V2eWPhyVNZR/Aym+2MC7CGKKn326Gnk5xs9nvNla1rBzqTuyfQw5RhCYW8aco9WaJzrBRU mix6OloFU2iALqsDXa3VJBBOBuvDxSDcrpE6XqcQxk88BxSEIGfzlVwSIc034l8ZNcMsX9 CLqJlLX0JVUcsJv03Miu/biKHNGgjcO+pVF2UpsG6HCqlLUIUWRrlWiWkfDcr52jicgYih 9PBHjs6W1KfVkeOOVCf8ndvUJ01cww6GVQIbMVLhWXdSzYK37Lyurt1PWehm44E4NPOnZG GDwwb5U6KKQ52KRQmPytI3u4LbEekCvEA+/d4CVnzCaDhDV28x658QuhKgMyfw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4RC9DB1M4kzvbN; Fri, 28 Jul 2023 14:35:54 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 36SEZsPS010332; Fri, 28 Jul 2023 14:35:54 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 36SEZsSR010331; Fri, 28 Jul 2023 14:35:54 GMT (envelope-from git) Date: Fri, 28 Jul 2023 14:35:54 GMT Message-Id: <202307281435.36SEZsSR010331@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 3ef8325ef676 - main - biology/atac-seq: Add curl to metaport deps List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3ef8325ef67662c4c8aa5c8cb2fcde7e1ccc3fe4 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=3ef8325ef67662c4c8aa5c8cb2fcde7e1ccc3fe4 commit 3ef8325ef67662c4c8aa5c8cb2fcde7e1ccc3fe4 Author: Jason W. Bacon AuthorDate: 2023-07-28 14:35:04 +0000 Commit: Jason W. Bacon CommitDate: 2023-07-28 14:35:04 +0000 biology/atac-seq: Add curl to metaport deps Standardizing on a download tool simplifies pipelines --- biology/atac-seq/Makefile | 6 +++--- biology/atac-seq/distinfo | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile index 226aef537d57..b8721671f6ac 100644 --- a/biology/atac-seq/Makefile +++ b/biology/atac-seq/Makefile @@ -1,6 +1,5 @@ PORTNAME= atac-seq -DISTVERSION= 0.1.2 -PORTREVISION= 1 +DISTVERSION= 0.1.3 CATEGORIES= biology python MASTER_SITES= # empty @@ -21,7 +20,8 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \ fasda>0:biology/fasda \ peak-classifier>0:biology/peak-classifier \ - webbrowser>0:www/webbrowser + webbrowser>0:www/webbrowser \ + curl>0:ftp/curl USES= metaport python diff --git a/biology/atac-seq/distinfo b/biology/atac-seq/distinfo index 79cf14b6de7f..0195f78851af 100644 --- a/biology/atac-seq/distinfo +++ b/biology/atac-seq/distinfo @@ -1 +1 @@ -TIMESTAMP = 1673549889 +TIMESTAMP = 1690554875