From nobody Fri Jul 28 14:33:11 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RC9935Csqz4pq1h; Fri, 28 Jul 2023 14:33:11 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RC9934hYpz3tn0; Fri, 28 Jul 2023 14:33:11 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690554791; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=aaHw5oHAewhHKNzt+zgaaAy069yKxKO57mTYbAHek6E=; b=N3M0RfMPqIkdSycj20nhF37tpfgZGBRNy7DrXevGatTo8k7ZF55zGChKqtDL6OVuoEBUpy f0I+1ZqWdZ0moXY2Z68RhzrV0R1/NWpQatVwJYY2nCmGt0lZJolMcD4GohN7YHQPBt20tA zrVbIzda4IG67NX6hoeHeyrGJSc8Gjd6dKPPqRpqCN4qbFuTPU8vlKaFOW7MSYso3zGe2q gNXaepX5Iv9zqLMoZBotzMrpf/m6Lueh4Q7ZsXnyWTl7CMJ1JP46WmAQS5CVdtGQpGURYO RpqCC4lUZElbTmxzENfPYJGNxlc9gA2THZ4MjKmPhkezIADLj7GDBmJ4N6WY+Q== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690554791; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=aaHw5oHAewhHKNzt+zgaaAy069yKxKO57mTYbAHek6E=; b=STXr65c0HUOjLIUj7NRCPhEyggMQAbuIRySUY/t9IczoxnJChjEWDZEjA2l0VwFwwYiSDa UHKLgpvp6efpfJ9QqyT/z1/F8V1JXQ7jitWW/nk6grIcnODV3lm34tqdelVz59xo3cxhix LaI7IJ5WIa7UPb24pnRCwSMGRiE3WzPzqL5n/nZZGjCELhaR6z5ECc/RYNXRr1Q63Gx7wF tpx1wCkKcG2Uq2iDYtPiDD943TrPmZE2A7efza7XZAZJ1/NzgmH+9Sth4IkjORy9sWAm5p wPKxCmdLunyEdoFLOoNv8ohSK0AGvyMwnkrzzU4TjgSq9cfQ5+C8ijwhIG0DMg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690554791; a=rsa-sha256; cv=none; b=AWICwSQGoCpEOQd6N1buiYIQYyEi51upaDEJ+2Uit5EdLp6R6fZyBmVm7Y6QK4MP5GSHRe f1qYCsi7DgkntBWGUJNXdntXK8jfBRhe2f/1EwqMDYb3Eq9sv1u5CzfOeLdbWpTf3UO+cP bTR2BwpdE0zAHbGSI6P1Y4y6E7UWWcVNwpSm9NOme6nHS4yZiB7lC8danDYKTQxiwqj96p tukJ0EXmPnk1ATafSQo1k8DbS3J7nqkPQrh9JEeIImwnpVXoORFxCaCOS5f/O03hmqjWJw dc76jkInG6xO9xmh2/su1bYDdmBiRw4jQUnkMy7Z2jelufrnIh8PHmAhQUcmxQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4RC9933llqzv8V; Fri, 28 Jul 2023 14:33:11 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 36SEXB1v009842; Fri, 28 Jul 2023 14:33:11 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 36SEXBkY009841; Fri, 28 Jul 2023 14:33:11 GMT (envelope-from git) Date: Fri, 28 Jul 2023 14:33:11 GMT Message-Id: <202307281433.36SEXBkY009841@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 74b4fa60b326 - main - biology/rna-seq: Add curl to metaport deps List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 74b4fa60b326c98e51513f50f216ee37443232f7 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=74b4fa60b326c98e51513f50f216ee37443232f7 commit 74b4fa60b326c98e51513f50f216ee37443232f7 Author: Jason W. Bacon AuthorDate: 2023-07-28 14:32:17 +0000 Commit: Jason W. Bacon CommitDate: 2023-07-28 14:32:17 +0000 biology/rna-seq: Add curl to metaport deps Standardizing on a download tool simplifies pipelines --- biology/rna-seq/Makefile | 6 +++--- biology/rna-seq/distinfo | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile index 6a4ff27e6aaf..3cf8374e4b07 100644 --- a/biology/rna-seq/Makefile +++ b/biology/rna-seq/Makefile @@ -1,6 +1,5 @@ PORTNAME= rna-seq -DISTVERSION= 0.1.2 -PORTREVISION= 1 +DISTVERSION= 0.1.3 CATEGORIES= biology python MASTER_SITES= # empty @@ -20,7 +19,8 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ hisat2>0:biology/hisat2 \ samtools>0:biology/samtools \ fasda>0:biology/fasda \ - webbrowser>0:www/webbrowser + webbrowser>0:www/webbrowser \ + curl>0:ftp/curl USES= metaport python diff --git a/biology/rna-seq/distinfo b/biology/rna-seq/distinfo index 012089e6842f..8a8b6583b713 100644 --- a/biology/rna-seq/distinfo +++ b/biology/rna-seq/distinfo @@ -1 +1 @@ -TIMESTAMP = 1673550086 +TIMESTAMP = 1690554702