git: a8369fa45f1e - main - science/agrum: Update 1.5.2 → 1.8.3

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Tue, 11 Jul 2023 20:07:10 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=a8369fa45f1e1c1a4a37d8922d7daba31c5ab13c

commit a8369fa45f1e1c1a4a37d8922d7daba31c5ab13c
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-07-11 20:07:01 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-07-11 20:07:08 +0000

    science/agrum: Update 1.5.2 → 1.8.3
---
 science/agrum/Makefile  |  5 ++--
 science/agrum/distinfo  |  6 ++---
 science/agrum/pkg-plist | 62 ++++++++++++++++++++++++++++---------------------
 3 files changed, 41 insertions(+), 32 deletions(-)

diff --git a/science/agrum/Makefile b/science/agrum/Makefile
index 1619252f3ef5..b272ac88da46 100644
--- a/science/agrum/Makefile
+++ b/science/agrum/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	agrum
-DISTVERSION=	1.5.2
-PORTREVISION=	1
+DISTVERSION=	1.8.3
 CATEGORIES=	science math
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -20,7 +19,7 @@ LLD_UNSAFE=	yes
 USE_GITLAB=	yes
 GL_ACCOUNT=	agrumery
 GL_PROJECT=	aGrUM
-GL_COMMIT=	9534f1a9e4855c9ec31883cb9b3acc88113a13e1
+GL_COMMIT=	ddc302c8758294bf54781c019195468f2764706d
 
 SHEBANG_FILES=	act
 
diff --git a/science/agrum/distinfo b/science/agrum/distinfo
index 8dcd0f8e2cf1..a1c515d831e8 100644
--- a/science/agrum/distinfo
+++ b/science/agrum/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1673639040
-SHA256 (agrumery-aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1_GL0.tar.gz) = 11972e148e57807b6ff84bdcb185d83c062961d5c4962d58a8dc0bfec69c5a3b
-SIZE (agrumery-aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1_GL0.tar.gz) = 21982253
+TIMESTAMP = 1689102716
+SHA256 (agrumery-aGrUM-ddc302c8758294bf54781c019195468f2764706d_GL0.tar.gz) = cb02374c2cb88e0aa0e84e53590bd81e3dfdcc33a20f630118f1fc71a90b5461
+SIZE (agrumery-aGrUM-ddc302c8758294bf54781c019195468f2764706d_GL0.tar.gz) = 22396596
diff --git a/science/agrum/pkg-plist b/science/agrum/pkg-plist
index a120dded8fe1..3ba3e925d13f 100644
--- a/science/agrum/pkg-plist
+++ b/science/agrum/pkg-plist
@@ -15,9 +15,9 @@ include/agrum/BN/algorithms/MarkovBlanket_inl.h
 include/agrum/BN/algorithms/barrenNodesFinder.h
 include/agrum/BN/algorithms/barrenNodesFinder_inl.h
 include/agrum/BN/algorithms/barrenNodesFinder_tpl.h
-include/agrum/BN/algorithms/dSeparation.h
-include/agrum/BN/algorithms/dSeparation_inl.h
-include/agrum/BN/algorithms/dSeparation_tpl.h
+include/agrum/BN/algorithms/dSeparationAlgorithm.h
+include/agrum/BN/algorithms/dSeparationAlgorithm_inl.h
+include/agrum/BN/algorithms/dSeparationAlgorithm_tpl.h
 include/agrum/BN/algorithms/divergence/BNdistance.h
 include/agrum/BN/algorithms/divergence/BNdistance_tpl.h
 include/agrum/BN/algorithms/divergence/GibbsBNdistance.h
@@ -110,6 +110,10 @@ include/agrum/BN/io/UAI/UAIBNWriter.h
 include/agrum/BN/io/UAI/UAIBNWriter_tpl.h
 include/agrum/BN/io/UAI/cocoR/Parser.h
 include/agrum/BN/io/UAI/cocoR/Scanner.h
+include/agrum/BN/io/XDSL/XDSLBNReader.h
+include/agrum/BN/io/XDSL/XDSLBNReader_tpl.h
+include/agrum/BN/io/XDSL/XDSLBNWriter.h
+include/agrum/BN/io/XDSL/XDSLBNWriter_tpl.h
 include/agrum/BN/io/cnf/CNFWriter.h
 include/agrum/BN/io/cnf/CNFWriter_tpl.h
 include/agrum/BN/io/cnf/ContextualDependenciesCNFWriter.h
@@ -323,30 +327,32 @@ include/agrum/ID/io/IDReader.h
 include/agrum/ID/io/IDReader_tpl.h
 include/agrum/ID/io/IDWriter.h
 include/agrum/ID/io/IDWriter_tpl.h
-include/agrum/MN/IMarkovNet.h
-include/agrum/MN/IMarkovNet_tpl.h
 include/agrum/MN/MarkovNet.h
-include/agrum/MN/MarkovNet_tpl.h
 include/agrum/MN/inference/ShaferShenoyMNInference.h
-include/agrum/MN/inference/ShaferShenoyMNInference_tpl.h
-include/agrum/MN/inference/tools/MarkovNetInference.h
-include/agrum/MN/inference/tools/MarkovNetInference_tpl.h
-include/agrum/MN/inference/tools/evidenceMNInference.h
-include/agrum/MN/inference/tools/evidenceMNInference_tpl.h
-include/agrum/MN/inference/tools/jointTargetedMNInference.h
-include/agrum/MN/inference/tools/jointTargetedMNInference_tpl.h
-include/agrum/MN/inference/tools/marginalTargetedMNInference.h
-include/agrum/MN/inference/tools/marginalTargetedMNInference_tpl.h
-include/agrum/MN/io/MNReader.h
-include/agrum/MN/io/MNReader_tpl.h
-include/agrum/MN/io/MNWriter.h
-include/agrum/MN/io/MNWriter_tpl.h
-include/agrum/MN/io/UAI/UAIMNReader.h
-include/agrum/MN/io/UAI/UAIMNReader_tpl.h
-include/agrum/MN/io/UAI/UAIMNWriter.h
-include/agrum/MN/io/UAI/UAIMNWriter_tpl.h
-include/agrum/MN/io/UAI/cocoR/Parser.h
-include/agrum/MN/io/UAI/cocoR/Scanner.h
+include/agrum/MRF/IMarkovRandomField.h
+include/agrum/MRF/IMarkovRandomField_tpl.h
+include/agrum/MRF/MarkovRandomField.h
+include/agrum/MRF/MarkovRandomField_tpl.h
+include/agrum/MRF/inference/ShaferShenoyMRFInference.h
+include/agrum/MRF/inference/ShaferShenoyMRFInference_tpl.h
+include/agrum/MRF/inference/tools/MRFInference.h
+include/agrum/MRF/inference/tools/MRFInference_tpl.h
+include/agrum/MRF/inference/tools/evidenceMRFInference.h
+include/agrum/MRF/inference/tools/evidenceMRFInference_tpl.h
+include/agrum/MRF/inference/tools/jointTargetedMRFInference.h
+include/agrum/MRF/inference/tools/jointTargetedMRFInference_tpl.h
+include/agrum/MRF/inference/tools/marginalTargetedMRFInference.h
+include/agrum/MRF/inference/tools/marginalTargetedMRFInference_tpl.h
+include/agrum/MRF/io/MRFReader.h
+include/agrum/MRF/io/MRFReader_tpl.h
+include/agrum/MRF/io/MRFWriter.h
+include/agrum/MRF/io/MRFWriter_tpl.h
+include/agrum/MRF/io/UAI/UAIMRFReader.h
+include/agrum/MRF/io/UAI/UAIMRFReader_tpl.h
+include/agrum/MRF/io/UAI/UAIMRFWriter.h
+include/agrum/MRF/io/UAI/UAIMRFWriter_tpl.h
+include/agrum/MRF/io/UAI/cocoR/Parser.h
+include/agrum/MRF/io/UAI/cocoR/Scanner.h
 include/agrum/PRM/IPRMFactory.h
 include/agrum/PRM/PRM.h
 include/agrum/PRM/PRMFactory.h
@@ -498,7 +504,6 @@ include/agrum/tools/core/list.h
 include/agrum/tools/core/list_tpl.h
 include/agrum/tools/core/math/Dirichlet.h
 include/agrum/tools/core/math/Dirichlet_inl.h
-include/agrum/tools/core/math/Dirichlet_tpl.h
 include/agrum/tools/core/math/chi2.h
 include/agrum/tools/core/math/chi2_inl.h
 include/agrum/tools/core/math/cocoR/Parser.h
@@ -543,6 +548,7 @@ include/agrum/tools/core/signal/signaler5.h
 include/agrum/tools/core/signal/signaler6.h
 include/agrum/tools/core/signal/signaler7.h
 include/agrum/tools/core/signal/signaler_with_args.pattern.h
+include/agrum/tools/core/signal/signalers.h
 include/agrum/tools/core/smallobjectallocator/fixedAllocator.h
 include/agrum/tools/core/smallobjectallocator/fixedAllocator_inl.h
 include/agrum/tools/core/smallobjectallocator/smallObjectAllocator.h
@@ -651,6 +657,8 @@ include/agrum/tools/graphicalModels/DAGmodel.h
 include/agrum/tools/graphicalModels/DAGmodel_inl.h
 include/agrum/tools/graphicalModels/UGmodel.h
 include/agrum/tools/graphicalModels/UGmodel_inl.h
+include/agrum/tools/graphicalModels/algorithms/informationTheory.h
+include/agrum/tools/graphicalModels/algorithms/informationTheory_tpl.h
 include/agrum/tools/graphicalModels/graphicalModel.h
 include/agrum/tools/graphicalModels/graphicalModel_inl.h
 include/agrum/tools/graphicalModels/inference/graphicalModelInference.h
@@ -945,10 +953,12 @@ lib/libagrum.so.%%VERSION%%
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/cn2graph.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/dynamicBN.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/explain.py
+%%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/export.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/id2graph.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/image.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/ipython.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/mn2graph.py
+%%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/mrf2graph.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/notebook.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/proba_histogram.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/pyAgrum.py