From nobody Sun Jul 09 16:38:34 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QzXrV5ghxz4m81N; Sun, 9 Jul 2023 16:38:34 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QzXrV583tz3RDd; Sun, 9 Jul 2023 16:38:34 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1688920714; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=73Toea/o/+VfYSFht4mL3uCBpANn2aBsMPVPAlgZ1uE=; b=mu4TMLxyTkLvW76e9sPel7kCMqwmHQt9zIWGDAUzpeQ2oSSepVCl1tyWvqCNLmQ8/I/eIj EHYko5HcEizfOuWhbHxFmnf29oekA4saerKFz+vmE2PGswU2vaK/GpC2o/xKaTG4RmH2WR JoyCFWBLXdmF1a1pL0sYtZyyjU3TTo6cF7lfbc55PDxGHXsuIe/RxIKxZR2EyMBHiV8Kzl 2InGbdch+y/q28+Y+ByuhfOKcJrLQpWXRFegQ9fXPHJ1aKYLG1/kuCEffcqwKqHww0Pu4f pZhQAx8U7dfngLSLHPLsHaAjmBuygIcxvGctadeRCr+IZ4i51ddx55Hyi6Mt0g== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1688920714; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=73Toea/o/+VfYSFht4mL3uCBpANn2aBsMPVPAlgZ1uE=; b=W2s7ELrDlOjUlD4uRlj2To1tnW5F+DJdzLxQ4niVH3YjT6lJ0dIcwOX0BYbt3G3cPY+Vbs OvUeHCejrwA6tf7H76jWm4aiG+qNm5WWYMRiNvqQfewh36ZzYDSF2VNIOsYUEwpY1w71FC 34amKPDmZd1lZK/88mqKcks22edcxNWGruf62P+SSSKHVsfTRvWziUpQZjiMaDaiz56QcF 23OCdZH/qLv8wwBgv9IG9Q9l5qjiNrxXuRHEEcGqOgwQIfEho3yfJmJy8vFXW1DxBEut3S GeomXbN44XyHcm4r5j/UjctWnrwQWFbheCHdUofuD03+YyVjNbDOskWFsxgQ2g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1688920714; a=rsa-sha256; cv=none; b=NVh/Axs+IsBbWNviIN7xuuTz/F/3z+nzXiQYDvTVgB6rh5+Ji5zQIfKsOC4wNbBDlveP/I Eta9zGREnrE+NDYZiuTMhy9R7zdPceH4D1KQJp4Dxgme62W+6jYxEEt/q8ViRmxlFlTrqx VygO62x2FbJ8AoJuCeJSZcwLeaqFvAlpQugGT5YfbCC3xbqgZ5DR1rMm+BwRvRQLq237jj E8Qbo9aYgrqdk9+z5SgOpHigaTfYTRWHuz7A6/hCj/czBedvmevlZ6tArkqqDnmSutesiH 6K5JgR/mnb8xwLcSF9/K/SiPSDSbBhFk1JzUga+Fw7aznEtELNvf6DX8bYDIuw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4QzXrV4Cntz18Mc; Sun, 9 Jul 2023 16:38:34 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 369GcYK1069770; Sun, 9 Jul 2023 16:38:34 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 369GcYwv069769; Sun, 9 Jul 2023 16:38:34 GMT (envelope-from git) Date: Sun, 9 Jul 2023 16:38:34 GMT Message-Id: <202307091638.369GcYwv069769@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 3df899be4147 - main - biology/haplohseq: Fix build on FreeBSD 14 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3df899be41477eac63133c5a618947719ae04f9e Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=3df899be41477eac63133c5a618947719ae04f9e commit 3df899be41477eac63133c5a618947719ae04f9e Author: Jason W. Bacon AuthorDate: 2023-07-09 16:37:39 +0000 Commit: Jason W. Bacon CommitDate: 2023-07-09 16:37:39 +0000 biology/haplohseq: Fix build on FreeBSD 14 Add -std=c++14 to override clang 16 default Reported by: pkg-fallout --- biology/haplohseq/Makefile | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/biology/haplohseq/Makefile b/biology/haplohseq/Makefile index 415a0d243c70..39694f381483 100644 --- a/biology/haplohseq/Makefile +++ b/biology/haplohseq/Makefile @@ -1,6 +1,6 @@ PORTNAME= haplohseq DISTVERSION= 0.1.2 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -12,7 +12,7 @@ LICENSE= MIT LIB_DEPENDS= libboost_system.so:devel/boost-libs RUN_DEPENDS= R-cran-optparse>0:devel/R-cran-optparse -USES= compiler:c++11-lang gmake localbase:ldflags python +USES= compiler:c++14-lang gmake localbase:ldflags python USE_GITHUB= yes GH_ACCOUNT= outpaddling @@ -20,6 +20,7 @@ GH_ACCOUNT= outpaddling OPTIONS_DEFINE= EXAMPLES MAKEFILE= makefile +CXXFLAGS+= -std=c++14 LDFLAGS+= -lpthread MAKE_ENV= STRIP=${STRIP}