From nobody Fri Feb 24 23:31:48 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PNmPd17b4z3v4X1; Fri, 24 Feb 2023 23:31:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PNmPd0Xpmz4JmJ; Fri, 24 Feb 2023 23:31:49 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1677281509; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=XtIHNvCwaZt/td3qq7v0HCb9ybEBxER1nHjS1K3lMr0=; b=tiiGQoeofz9UfxPtZJ+pEJPCNWA7ApasufoeMt3p1L/BxQePVQ+Ylo62KKZQpY+y6wjege m3umravW4SE18iZp/bt3doaPqptg2OpVWhi3et51jnH5/IXjhA7e7A1BRd9dWMqi3Gy53E YFZzePVyUfA7J9L1+wlzOfRknX4+FGQwRv/KdGW/K5X8/P5v/hIf+A9fnSHsAVZ7AGnMcp HoQTrluTCRiZakbNzE1JP/vRO2cTzFInkxFoOiEnqHqwSkjVsGFGXive/X4rhdRI3FVZdE SBTVbwwiTrs9fDVneuwH+ESd5r4oJpZ+rKGcY7xXHkZKMMFbtNGVkTYrwm9nEA== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1677281509; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=XtIHNvCwaZt/td3qq7v0HCb9ybEBxER1nHjS1K3lMr0=; b=rDhgpkcEcqjCcd7qtIJLU7MA+oN1Lis+BJih6AlTz/3gkMroIHCTDUa7UKBqZoX3SBUJ13 paJa11JrMv/jrsuaMdfGOILhv9clPlHbRlLk4IN3R2AslIxrpI1ppA35U+jNVWO35nAgES RzLGGEoxo0EeW241JvmK4iR6eTdJrFBiYjOa5jKnLZxETN19yeAavRORHY2SlJQINvsu33 YA//Ublyr+tfP50VOuaYenByCzVjPPUxYcPt6PHp/08Guyaj9gtTz9570WEnvnsTzqI2eL GEymg7a4TllCT17TKcJUuvbZQPoAN3nE5SXBg+7TXDPDtFDVEo69IVsZcbWM+w== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1677281509; a=rsa-sha256; cv=none; b=CQpewoO9WBvuW8oXDW81Y91Oa6LHNYcf+bhfwVl05b4Wx/nPdn07pErsMpPBWzOF/rQdVI kX/1CgbRlieJcJ4/d4SCl3HBq2BHG5nCoKAkCD2Xm4NVJ/ZOp/qxMmhDoXH+PYkIQ8SnZP 5usC9CKG6ZAFZsCzr7mmbHiTXy1lsG6L0kLMV7QxLAdDoKwgeKddm1zFYuY36wMnZzV21b j3eY208f0X3MkOthWrDYm2nQ1DHnCIeLLvfHftdMVqpJeqw7sKJRwI+Y70pYNM7oADysZN VOGQa8ANPkMKiRjiurEhYwZ+GL8XeJAz1QbsAvGC++uN/zfYILL9o4Nv+2p1IQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PNmPc6XP1zj5n; Fri, 24 Feb 2023 23:31:48 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 31ONVmmM059473; Fri, 24 Feb 2023 23:31:48 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 31ONVmRC059472; Fri, 24 Feb 2023 23:31:48 GMT (envelope-from git) Date: Fri, 24 Feb 2023 23:31:48 GMT Message-Id: <202302242331.31ONVmRC059472@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 65b8ab93497d - main - biology/bcftools: Update to 1.17 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 65b8ab93497d27dee8afc5c3451a5303210595d1 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=65b8ab93497d27dee8afc5c3451a5303210595d1 commit 65b8ab93497d27dee8afc5c3451a5303210595d1 Author: Jason W. Bacon AuthorDate: 2023-02-24 23:30:58 +0000 Commit: Jason W. Bacon CommitDate: 2023-02-24 23:30:58 +0000 biology/bcftools: Update to 1.17 Numerous enhancements and bug fixes Changes: https://github.com/samtools/bcftools/releases Reported by: portscout --- biology/bcftools/Makefile | 2 +- biology/bcftools/distinfo | 6 +++--- biology/bcftools/pkg-plist | 1 + 3 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile index 0f6c3ba013e0..f66f21b9b81d 100644 --- a/biology/bcftools/Makefile +++ b/biology/bcftools/Makefile @@ -1,5 +1,5 @@ PORTNAME= bcftools -PORTVERSION= 1.16 +PORTVERSION= 1.17 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/bcftools/distinfo b/biology/bcftools/distinfo index 0ff5fb7eef59..e485c96d9038 100644 --- a/biology/bcftools/distinfo +++ b/biology/bcftools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1672094717 -SHA256 (samtools-bcftools-1.16_GH0.tar.gz) = c44c85a04e058e1f1eceeb712106031100bbd700b8ff3f623f7ff872469a4ba3 -SIZE (samtools-bcftools-1.16_GH0.tar.gz) = 3432435 +TIMESTAMP = 1677246068 +SHA256 (samtools-bcftools-1.17_GH0.tar.gz) = e6fdb4c94b531671ea8a0b00cb9245aa2602f6c4480621e45dac76338f590b9e +SIZE (samtools-bcftools-1.17_GH0.tar.gz) = 3481344 diff --git a/biology/bcftools/pkg-plist b/biology/bcftools/pkg-plist index 0a24964f9656..15a3206a846c 100644 --- a/biology/bcftools/pkg-plist +++ b/biology/bcftools/pkg-plist @@ -30,6 +30,7 @@ libexec/bcftools/impute-info.so libexec/bcftools/indel-stats.so libexec/bcftools/isecGT.so libexec/bcftools/mendelian.so +libexec/bcftools/mendelian2.so libexec/bcftools/missing2ref.so libexec/bcftools/parental-origin.so libexec/bcftools/prune.so