From nobody Sun Feb 19 18:11:49 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PKYXj3TH9z3rX2x; Sun, 19 Feb 2023 18:11:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PKYXj33qSz3qbx; Sun, 19 Feb 2023 18:11:49 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676830309; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bJneORDDqo+XjvIBg1v3EvgrvmdcvCvaov8TR8jqtNo=; b=n9/jm01cwlGyvj+fyvyyN5IzpoMo4C4pIkcjErrXGQykI/zEjnHscN6PsTTLMuBDRmk6DT mXVU6bDtQMRh9oe4lbZ3FHI+WOei2OXnGJR8PADjTLCKHQ+amwOtBJRrrnLDUYjxAwwS/m xqF4/CwGuIylxwqYypCyp9rc/VTTJmEDbQWzhw9W4N+p1tDEj+q8nvqKdYS2MedR4RvQQr OtqqXvXYQ4/HBKQmmueHJaXs11qaLuBqZsbTG5H2IBahyXqZ70JOODnGrt5jhgJ7btv6D9 BHtmRQnL0swrhdD8hcbOIdTcQdPlCDqoODE3pdQS76bePN/XflVj7NoYoPSgGw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676830309; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bJneORDDqo+XjvIBg1v3EvgrvmdcvCvaov8TR8jqtNo=; b=RQ/6X38yynZhz24FKnj/rGWa1zxzCl4TqVXUg/cD2ZxV/MKQJV+qr+pY4h2fQfvCglw1jY LLsk1RmrKqAsz7BB5wTns/AVsHup6SvMgDCedke35gSJ3kZ996oWWTQu+oa15CK1eC9p/c rXuMqqzUyKZIKVM95WbNKLsapTh0QkwFVL7XYy5JtGdGU6WkNGPX+CY97JGo+Xw0XajFzo BGsn3CoUjRtq0a5PuwGV9mGqg6mvCwJ41IaU4lnE7km3zx2s3b75IxDhmCkTv7V4un4E7m UVvpmz3i5wPiaNWcr4xKTtLnmbPOQ8qxinWg1Zc/2Ui9xi1BBBEKu1UFD7ViXw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1676830309; a=rsa-sha256; cv=none; b=htIAs/HwC+EZ+Uvp6XHNHSV8EzQ/LuEQPI0M0ssHdxcyZen9qNi480UoN84IAyU1W8ZQr7 dNPVldFsIGef0Kb+IbHTd3luPU2vfXHP8Nqi4PGfUs78owv9PEXTFuwJKd1j1T4ok6yfx5 4GAstYlRJMIoI57k1ake7W3TwSv9z01D5bSQ5fQi+rjGSJZPTdrGmEzlrND8EWeFc6yLKE aMZgKjmQPiUaNbmNa9y0tl55yqxqFmzANgTlXUVFrjqUEd10+KaLl6tUenTRuwzZRxcgYy 3pRv/xzwvF3E3zF4tYqgnCVQmTSejqKTlIIw3xPysxoeWmzOLySpVDyHYI1XnA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PKYXj28gTz1BGc; Sun, 19 Feb 2023 18:11:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 31JIBncn063134; Sun, 19 Feb 2023 18:11:49 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 31JIBnid063133; Sun, 19 Feb 2023 18:11:49 GMT (envelope-from git) Date: Sun, 19 Feb 2023 18:11:49 GMT Message-Id: <202302191811.31JIBnid063133@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: ada9b15851e5 - main - biology/atac-seq: Drop biology/igv dep List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: ada9b15851e566b9c67ef8374eba913aa3561292 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=ada9b15851e566b9c67ef8374eba913aa3561292 commit ada9b15851e566b9c67ef8374eba913aa3561292 Author: Jason W. Bacon AuthorDate: 2023-02-19 18:11:12 +0000 Commit: Jason W. Bacon CommitDate: 2023-02-19 18:11:12 +0000 biology/atac-seq: Drop biology/igv dep Non-essential and currently broken --- biology/atac-seq/Makefile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile index a0da032ee1b0..46a1adb3bcda 100644 --- a/biology/atac-seq/Makefile +++ b/biology/atac-seq/Makefile @@ -1,5 +1,5 @@ PORTNAME= atac-seq -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.2 CATEGORIES= biology python MASTER_SITES= # empty @@ -17,7 +17,6 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ bwa>0:biology/bwa \ bowtie2>0:biology/bowtie2 \ samtools>0:biology/samtools \ - igv>0:biology/igv \ ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \ fasda>0:biology/fasda \ peak-classifier>0:biology/peak-classifier \