From nobody Sun Feb 19 18:11:48 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PKYXh2f1tz3rWpy; Sun, 19 Feb 2023 18:11:48 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PKYXh2BQSz3qbX; Sun, 19 Feb 2023 18:11:48 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676830308; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=x/t9lgO3ATlB+vq0eHG20PUpuholUvBdE2GPYGmHTlc=; b=MURMZaEmvWO7UenCvLEuogHEDZdlzRKvd0xAWCLxrIKkYFNPd/an31gmuHfthbK0sdSNx9 Y8M4VixtMfy93LaIKRPPlyuCOg33znN8/4c909MzaoaoiM2TkmWvZ8NxEYirlKNENYyte2 xe6pJxkfTU6TPSS41gd4XUdwcWXV0g0QKHlRIRxMsJuEB4G7uU+PjpOyLzbG7aZVlhIFdP s+x6cZU5rd/ANvS4hzn7kInxxHEm6O48DlwMqJ69T2hrHePcuDKWSvKL0X2HDeUkkLlfWB SJToNlrmLCNW2rc5uouIytFcFELQ0ekybiBlma3brBT+stNK3LPtrqTHIxy3TA== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676830308; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=x/t9lgO3ATlB+vq0eHG20PUpuholUvBdE2GPYGmHTlc=; b=oA5RGDp3mMAoejHIXhWyJFo1acGoWsfGA3AJFt13nwHT8K9ttUD32fDuTmZCrrYaWnCWbA urA2HLGcTi0ILF69SXG/OFu7ztAYRc0G06/nSiPJyk1rSNZMMmT5gtq0XK8HsO49eRg28q 7RDBzJy/9WdLj9QydYlNYMoRnHTKtwrVgpBLrzj9XIcc6N58vNlqeo8cZlh2pK6Vvv5eq6 eaO7VZf4sT3y6BrHM4DbUBYUlqgE0c2n6ztO2fY+M9mvkLYiLBgYqYlELW6WIxevjh3NCJ Mu0m3a+v8dz+GbQfuGVfzg1b21GT16oswa3F2OGDkp1HnGhitbAGg6Dc6wf/mQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1676830308; a=rsa-sha256; cv=none; b=tlae0QbJXvJeFEHTIAoeTXYqRn5wIjNBkDd0gwIYcULNcIINbrU9vm2KVYaI92N76Y14HH XWtmBzp33KoVNqtMSLbPUOOYU/5gWB3EGkw0g0KEIihRFAafav6ZCFaReWAs/L3MlRF7G2 v2Gk+68y4MfxuR3Dd8zg9i7qap+N/7lgcRB+5TGgPBChQQDO7LWuQpM0ypifqYcWwELgnw Rvih0vgMsQr+JdXEfW58MUVoV7dSgfOoVLGJ3mO4VFZQVUGaHoXFJWvrRkDw5F9zhMHRkQ /1auTk4I/7bm76xq86x1Rs68f0rFbF/tB/sJhw4yaYP0fnnLn2Ph20ZrmLuDFA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PKYXh1Fjyz1B4H; Sun, 19 Feb 2023 18:11:48 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 31JIBmgq063115; Sun, 19 Feb 2023 18:11:48 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 31JIBm8p063114; Sun, 19 Feb 2023 18:11:48 GMT (envelope-from git) Date: Sun, 19 Feb 2023 18:11:48 GMT Message-Id: <202302191811.31JIBm8p063114@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: d91c1fae701d - main - biology/rna-seq: Drop biology/igv dep List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: d91c1fae701d1491d510e35cf430af7c8c3f93b0 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=d91c1fae701d1491d510e35cf430af7c8c3f93b0 commit d91c1fae701d1491d510e35cf430af7c8c3f93b0 Author: Jason W. Bacon AuthorDate: 2023-02-19 18:10:17 +0000 Commit: Jason W. Bacon CommitDate: 2023-02-19 18:10:17 +0000 biology/rna-seq: Drop biology/igv dep Non-essential and currently broken --- biology/rna-seq/Makefile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile index e48022711cfd..d7b50a9c24d7 100644 --- a/biology/rna-seq/Makefile +++ b/biology/rna-seq/Makefile @@ -1,5 +1,5 @@ PORTNAME= rna-seq -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.2 CATEGORIES= biology python MASTER_SITES= # empty @@ -18,7 +18,6 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ kallisto>0:biology/kallisto \ hisat2>0:biology/hisat2 \ samtools>0:biology/samtools \ - igv>0:biology/igv \ fasda>0:biology/fasda \ webbrowser>0:www/webbrowser