git: f47c4702d35c - main - science/py-trx-python: New port: Experiments with new file format for tractography

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=f47c4702d35c68b06f643f35c9cb97aa064e4bb5

commit f47c4702d35c68b06f643f35c9cb97aa064e4bb5
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-12-17 18:01:42 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-12-17 19:01:48 +0000

    science/py-trx-python: New port: Experiments with new file format for tractography
---
 science/Makefile                |  1 +
 science/py-trx-python/Makefile  | 34 ++++++++++++++++++++++++++++++++++
 science/py-trx-python/distinfo  |  3 +++
 science/py-trx-python/pkg-descr |  2 ++
 4 files changed, 40 insertions(+)

diff --git a/science/Makefile b/science/Makefile
index 54349ac30d32..7652e118ab37 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -442,6 +442,7 @@
     SUBDIR += py-thewalrus
     SUBDIR += py-tobler
     SUBDIR += py-trainstation
+    SUBDIR += py-trx-python
     SUBDIR += py-tweedledum
     SUBDIR += py-vedo
     SUBDIR += py-veusz
diff --git a/science/py-trx-python/Makefile b/science/py-trx-python/Makefile
new file mode 100644
index 000000000000..affec6e6d4b7
--- /dev/null
+++ b/science/py-trx-python/Makefile
@@ -0,0 +1,34 @@
+PORTNAME=	trx-python # this project is planned to be merged into DIPY (science/py-dipy)
+DISTVERSION=	0.2.9
+CATEGORIES=	science python
+MASTER_SITES=	PYPI
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Experiments with new file format for tractography
+WWW=		https://tee-ar-ex.github.io/trx-python/
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}deepdiff>0:devel/py-deepdiff@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \
+		${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}packaging>=19.0:devel/py-packaging@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}setuptools_scm>=3.4:devel/py-setuptools_scm@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
+RUN_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} # mistaken dependency, see https://github.com/tee-ar-ex/trx-python/issues/73
+TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}flake8>=0:devel/py-flake8@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pytest-console-scripts>0:devel/py-pytest-console-scripts@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	pep517 cython autoplist pytest # few tests fail due to missing files
+
+#USE_GITHUB=	yes
+#GH_ACCOUNT=	tee-ar-ex
+
+TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
+
+.include <bsd.port.mk>
diff --git a/science/py-trx-python/distinfo b/science/py-trx-python/distinfo
new file mode 100644
index 000000000000..6ad4dbd64b8f
--- /dev/null
+++ b/science/py-trx-python/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1702835339
+SHA256 (trx-python-0.2.9.tar.gz) = 16b4104d7c991879c601f60e8d587decac50ce60388aae8d0c754a92136d1caf
+SIZE (trx-python-0.2.9.tar.gz) = 86016
diff --git a/science/py-trx-python/pkg-descr b/science/py-trx-python/pkg-descr
new file mode 100644
index 000000000000..ca7ed7ee4295
--- /dev/null
+++ b/science/py-trx-python/pkg-descr
@@ -0,0 +1,2 @@
+trx is a Python implementation of the trx file-format
+for tractography data.