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Thu, 10 Nov 2022 17:36:47 GMT (envelope-from git) Date: Thu, 10 Nov 2022 17:36:47 GMT Message-Id: <202211101736.2AAHalbe059137@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: db3783aa5833 - main - biology/py-pysam: Update 0.19.1 -> 0.20.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: db3783aa5833f88f17addb0981560d6af670316e Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=db3783aa5833f88f17addb0981560d6af670316e commit db3783aa5833f88f17addb0981560d6af670316e Author: Yuri Victorovich AuthorDate: 2022-11-10 05:20:59 +0000 Commit: Yuri Victorovich CommitDate: 2022-11-10 17:36:45 +0000 biology/py-pysam: Update 0.19.1 -> 0.20.0 Reported by: portscout --- biology/py-pysam/Makefile | 15 +++++++++------ biology/py-pysam/distinfo | 8 +++----- 2 files changed, 12 insertions(+), 11 deletions(-) diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index e91f94f5d1fd..8e12dd618f5b 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,13 +1,9 @@ PORTNAME= pysam -DISTVERSION= 0.19.1 -PORTREVISION= 1 +DISTVERSION= 0.20.0 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} -PATCH_SITES= https://github.com/pysam-developers/pysam/commit/ -PATCHFILES= 064c8024395a15024fd590bd90f55f918e15545f.patch:-p1 # backport of symbols failure fix for arm and risc - MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading, manipulating and writing genomic data sets WWW= https://github.com/pysam-developers/pysam @@ -16,6 +12,13 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING USES= gmake python:3.6-3.9 -USE_PYTHON= autoplist distutils cython cython_run +USE_PYTHON= autoplist distutils cython cython_run pytest + +CFLAGS+= -fPIC # workaround for https://github.com/pysam-developers/pysam/issues/1146 + +BINARY_ALIAS= make=${GMAKE} + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so .include diff --git a/biology/py-pysam/distinfo b/biology/py-pysam/distinfo index e92952ac8d70..ff34934adf54 100644 --- a/biology/py-pysam/distinfo +++ b/biology/py-pysam/distinfo @@ -1,5 +1,3 @@ -TIMESTAMP = 1658245018 -SHA256 (pysam-0.19.1.tar.gz) = dee403cbdf232170c1e11cc24c76e7dd748fc672ad38eb0414f3b9d569b1448f -SIZE (pysam-0.19.1.tar.gz) = 3857553 -SHA256 (064c8024395a15024fd590bd90f55f918e15545f.patch) = e4655d70d0debe00f7937b9b3f18318acbcb8ae832165542c1531233320c6df7 -SIZE (064c8024395a15024fd590bd90f55f918e15545f.patch) = 1237 +TIMESTAMP = 1668031193 +SHA256 (pysam-0.20.0.tar.gz) = 7cc250148ba0ffc9bdc38db6988b91e13b75db0d11c18cf1336467d1c97dd312 +SIZE (pysam-0.20.0.tar.gz) = 3958505