git: 64c437262d4e - main - biology/gatk: Update 4.2.6.0 -> 4.2.6.1
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Date: Mon, 23 May 2022 02:05:44 UTC
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=64c437262d4e175501de11a3e855431e8e08833b commit 64c437262d4e175501de11a3e855431e8e08833b Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2022-05-23 02:04:54 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2022-05-23 02:05:40 +0000 biology/gatk: Update 4.2.6.0 -> 4.2.6.1 --- biology/gatk/Makefile | 7 +++++-- biology/gatk/distinfo | 10 +++++----- 2 files changed, 10 insertions(+), 7 deletions(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 4c3a2bc0147f..9e4672363cc2 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,5 +1,5 @@ PORTNAME= gatk -DISTVERSION= 4.2.6.0 +DISTVERSION= 4.2.6.1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -14,9 +14,12 @@ BROKEN_FreeBSD_12_powerpc64= fails to build: String index out of range: -1 BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime +USE_JAVA= yes + +JAVA_VERSION= 12 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn + USE_GITHUB= yes GH_ACCOUNT= broadinstitute -USE_JAVA= yes SUB_FILES= ${PORTNAME}.sh SUB_LIST= PORTVERSION=${PORTVERSION} JAVA=${JAVA} diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo index 1aba6894ba0a..59042632fd71 100644 --- a/biology/gatk/distinfo +++ b/biology/gatk/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1649626976 -SHA256 (gatk-4.2.6.0-deps.tar.gz) = 8463fb40b969ef29b59663e222b00478aec5704be29ac166706457aa05cf5514 -SIZE (gatk-4.2.6.0-deps.tar.gz) = 545437623 -SHA256 (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 6474111fd7686d06d9b6cb358c189739f15f8d720b5ce079fc0e3356e3e76bc2 -SIZE (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 92541777 +TIMESTAMP = 1653271029 +SHA256 (gatk-4.2.6.1-deps.tar.gz) = 29c953f5e4ced2c06115d0f1ec8a501a5f17d0ed07337654249732680851c880 +SIZE (gatk-4.2.6.1-deps.tar.gz) = 545446960 +SHA256 (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 248cefeaf3ea62ad672ff6402d82631e8b85a03d019c29bbb44d842f799dda67 +SIZE (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 92503297