git: 64fdc340a0c2 - main - math/openturns: Update 1.18 -> 1.19
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Date: Wed, 11 May 2022 03:55:44 UTC
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=64fdc340a0c2b7234074e55833b0c72b4af680ed commit 64fdc340a0c2b7234074e55833b0c72b4af680ed Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2022-05-11 03:55:16 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2022-05-11 03:55:42 +0000 math/openturns: Update 1.18 -> 1.19 --- math/openturns/Makefile | 7 +- math/openturns/distinfo | 6 +- math/openturns/pkg-plist | 210 ++++++++++++++++++++++++++++++++++------------- 3 files changed, 158 insertions(+), 65 deletions(-) diff --git a/math/openturns/Makefile b/math/openturns/Makefile index ce56e02f2d3d..c5b2ac339c71 100644 --- a/math/openturns/Makefile +++ b/math/openturns/Makefile @@ -1,7 +1,6 @@ PORTNAME= openturns DISTVERSIONPREFIX= v -DISTVERSION= 1.18 -PORTREVISION= 6 +DISTVERSION= 1.19 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -16,6 +15,7 @@ BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libblas.so:math/blas \ libbonmin.so:math/bonmin \ + libboost_serialization.so:devel/boost-libs \ libcamd.so:math/suitesparse-camd \ libceres.so:math/ceres-solver \ libCbc.so:math/cbc \ @@ -42,6 +42,7 @@ LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libnauty.so:math/nauty \ libnlopt.so:math/nlopt \ libOsi.so:math/osi \ + libpagmo.so:science/pagmo2 \ libpng16.so:graphics/png \ libprimesieve.so:math/primesieve \ libspqr.so:math/suitesparse-spqr \ @@ -50,7 +51,7 @@ LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libtbb.so:devel/onetbb \ libunwind.so:devel/libunwind -USES= bison blaslapack:openblas cmake eigen:3 gnome jpeg localbase:ldflags pkgconfig sqlite xorg # compiler:c++14-lang +USES= bison blaslapack:openblas cmake eigen:3 gnome jpeg localbase:ldflags pkgconfig sqlite xorg # compiler:c++17-lang USE_GITHUB= yes USE_GNOME= libxml2 USE_XORG= ice sm x11 xau xcb xdmcp xext diff --git a/math/openturns/distinfo b/math/openturns/distinfo index a330884e7910..6011728eb038 100644 --- a/math/openturns/distinfo +++ b/math/openturns/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1636538563 -SHA256 (openturns-openturns-v1.18_GH0.tar.gz) = 1840d3fd8b38fd5967b1fa04e49d8f760c2c497400430e97623595ca48754ae0 -SIZE (openturns-openturns-v1.18_GH0.tar.gz) = 11544559 +TIMESTAMP = 1652226698 +SHA256 (openturns-openturns-v1.19_GH0.tar.gz) = 1d61cb6ce8ec1121db9f1e9fb490aaa056d2ff250db26df05d2e3e30ceb32344 +SIZE (openturns-openturns-v1.19_GH0.tar.gz) = 11641096 diff --git a/math/openturns/pkg-plist b/math/openturns/pkg-plist index ad0a964c4dd1..bce594017284 100644 --- a/math/openturns/pkg-plist +++ b/math/openturns/pkg-plist @@ -69,8 +69,6 @@ include/openturns/Cache.hxx include/openturns/CalibrationAlgorithm.hxx include/openturns/CalibrationAlgorithmImplementation.hxx include/openturns/CalibrationResult.hxx -include/openturns/CalibrationStrategy.hxx -include/openturns/CalibrationStrategyImplementation.hxx include/openturns/CanonicalTensorEvaluation.hxx include/openturns/CanonicalTensorGradient.hxx include/openturns/Catalog.hxx @@ -248,6 +246,7 @@ include/openturns/FunctionalChaosAlgorithm.hxx include/openturns/FunctionalChaosRandomVector.hxx include/openturns/FunctionalChaosResult.hxx include/openturns/FunctionalChaosSobolIndices.hxx +include/openturns/GalambosCopula.hxx include/openturns/Gamma.hxx include/openturns/GammaFactory.hxx include/openturns/GammaFunctions.hxx @@ -269,6 +268,7 @@ include/openturns/GeneralizedParetoFactory.hxx include/openturns/Geometric.hxx include/openturns/GeometricFactory.hxx include/openturns/GeometricProfile.hxx +include/openturns/Gibbs.hxx include/openturns/Gradient.hxx include/openturns/GradientImplementation.hxx include/openturns/Graph.hxx @@ -286,6 +286,15 @@ include/openturns/HMatrix.hxx include/openturns/HMatrixFactory.hxx include/openturns/HMatrixImplementation.hxx include/openturns/HMatrixParameters.hxx +include/openturns/HSICEstimator.hxx +include/openturns/HSICEstimatorConditionalSensitivity.hxx +include/openturns/HSICEstimatorGlobalSensitivity.hxx +include/openturns/HSICEstimatorImplementation.hxx +include/openturns/HSICEstimatorTargetSensitivity.hxx +include/openturns/HSICStat.hxx +include/openturns/HSICStatImplementation.hxx +include/openturns/HSICUStat.hxx +include/openturns/HSICVStat.hxx include/openturns/HaarWavelet.hxx include/openturns/HaarWaveletFactory.hxx include/openturns/HaltonSequence.hxx @@ -310,6 +319,7 @@ include/openturns/IdentityFunction.hxx include/openturns/IdentityMatrix.hxx include/openturns/ImportanceSamplingExperiment.hxx include/openturns/IndependentCopula.hxx +include/openturns/IndependentMetropolisHastings.hxx include/openturns/IndicatorEvaluation.hxx include/openturns/IndicatorFunction.hxx include/openturns/Indices.hxx @@ -346,6 +356,11 @@ include/openturns/InverseWishart.hxx include/openturns/Ipopt.hxx include/openturns/IsotropicCovarianceModel.hxx include/openturns/IteratedQuadrature.hxx +include/openturns/IterativeAlgorithm.hxx +include/openturns/IterativeAlgorithmImplementation.hxx +include/openturns/IterativeExtrema.hxx +include/openturns/IterativeMoments.hxx +include/openturns/IterativeThresholdExceedance.hxx include/openturns/JacobiFactory.hxx include/openturns/JansenSensitivityAlgorithm.hxx include/openturns/JoeCopula.hxx @@ -428,7 +443,6 @@ include/openturns/LogisticFactory.hxx include/openturns/LowDiscrepancyExperiment.hxx include/openturns/LowDiscrepancySequence.hxx include/openturns/LowDiscrepancySequenceImplementation.hxx -include/openturns/MCMC.hxx include/openturns/MarginalDistribution.hxx include/openturns/MarginalEvaluation.hxx include/openturns/MarginalGradient.hxx @@ -459,6 +473,8 @@ include/openturns/MetaModelResult.hxx include/openturns/MetaModelValidation.hxx include/openturns/MethodBoundEvaluation.hxx include/openturns/MethodOfMomentsFactory.hxx +include/openturns/MetropolisHastings.hxx +include/openturns/MetropolisHastingsImplementation.hxx include/openturns/MinCopula.hxx include/openturns/MinimumVolumeClassifier.hxx include/openturns/MixedHistogramUserDefined.hxx @@ -474,6 +490,8 @@ include/openturns/MultiStart.hxx include/openturns/Multinomial.hxx include/openturns/MultinomialFactory.hxx include/openturns/MutexLock.hxx +include/openturns/NAIS.hxx +include/openturns/NAISResult.hxx include/openturns/NLopt.hxx include/openturns/NaiveEnclosingSimplex.hxx include/openturns/NaiveNearestNeighbour.hxx @@ -533,6 +551,7 @@ include/openturns/OTFunc.hxx include/openturns/OTFunctionalChaos.hxx include/openturns/OTGeom.hxx include/openturns/OTGraph.hxx +include/openturns/OTIterativeStat.hxx include/openturns/OTKriging.hxx include/openturns/OTLinearModel.hxx include/openturns/OTMarginalTransformation.hxx @@ -592,6 +611,7 @@ include/openturns/OrthonormalizationAlgorithmImplementation.hxx include/openturns/Os.hxx include/openturns/P1LagrangeEvaluation.hxx include/openturns/P1LagrangeInterpolation.hxx +include/openturns/Pagmo.hxx include/openturns/ParametricEvaluation.hxx include/openturns/ParametricFunction.hxx include/openturns/ParametricGradient.hxx @@ -672,6 +692,7 @@ include/openturns/RandomGeneratorState.hxx include/openturns/RandomMixture.hxx include/openturns/RandomVector.hxx include/openturns/RandomVectorImplementation.hxx +include/openturns/RandomVectorMetropolisHastings.hxx include/openturns/RandomWalk.hxx include/openturns/RandomWalkMetropolisHastings.hxx include/openturns/RankMCovarianceModel.hxx @@ -766,6 +787,7 @@ include/openturns/SymmetricMatrix.hxx include/openturns/SymmetricTensor.hxx include/openturns/SystemFORM.hxx include/openturns/TBB.hxx +include/openturns/TBBImplementation.hxx include/openturns/TNC.hxx include/openturns/TTY.hxx include/openturns/TaylorExpansionMoments.hxx @@ -775,6 +797,7 @@ include/openturns/Tensor.hxx include/openturns/TensorApproximationAlgorithm.hxx include/openturns/TensorApproximationResult.hxx include/openturns/TensorImplementation.hxx +include/openturns/TensorProductExperiment.hxx include/openturns/TensorizedCovarianceModel.hxx include/openturns/TensorizedUniVariateFunctionFactory.hxx include/openturns/TestResult.hxx @@ -906,6 +929,7 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/BaseFuncTemplateDefs.i %%PYTHON%%include/openturns/swig/BaseGeomTemplateDefs.i %%PYTHON%%include/openturns/swig/BaseGraphTemplateDefs.i +%%PYTHON%%include/openturns/swig/BaseIterativeStatisticsTemplateDefs.i %%PYTHON%%include/openturns/swig/BaseOptimTemplateDefs.i %%PYTHON%%include/openturns/swig/BaseSolverTemplateDefs.i %%PYTHON%%include/openturns/swig/BaseStatisticsTemplateDefs.i @@ -980,10 +1004,6 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/CalibrationAlgorithm_doc.i %%PYTHON%%include/openturns/swig/CalibrationResult.i %%PYTHON%%include/openturns/swig/CalibrationResult_doc.i -%%PYTHON%%include/openturns/swig/CalibrationStrategy.i -%%PYTHON%%include/openturns/swig/CalibrationStrategyImplementation.i -%%PYTHON%%include/openturns/swig/CalibrationStrategyImplementation_doc.i -%%PYTHON%%include/openturns/swig/CalibrationStrategy_doc.i %%PYTHON%%include/openturns/swig/CanonicalTensorEvaluation.i %%PYTHON%%include/openturns/swig/CanonicalTensorEvaluation_doc.i %%PYTHON%%include/openturns/swig/CanonicalTensorGradient.i @@ -1317,6 +1337,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/FunctionalChaosResult_doc.i %%PYTHON%%include/openturns/swig/FunctionalChaosSobolIndices.i %%PYTHON%%include/openturns/swig/FunctionalChaosSobolIndices_doc.i +%%PYTHON%%include/openturns/swig/GalambosCopula.i +%%PYTHON%%include/openturns/swig/GalambosCopula_doc.i %%PYTHON%%include/openturns/swig/Gamma.i %%PYTHON%%include/openturns/swig/GammaFactory.i %%PYTHON%%include/openturns/swig/GammaFactory_doc.i @@ -1357,6 +1379,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/GeometricProfile.i %%PYTHON%%include/openturns/swig/GeometricProfile_doc.i %%PYTHON%%include/openturns/swig/Geometric_doc.i +%%PYTHON%%include/openturns/swig/Gibbs.i +%%PYTHON%%include/openturns/swig/Gibbs_doc.i %%PYTHON%%include/openturns/swig/Gradient.i %%PYTHON%%include/openturns/swig/GradientImplementation.i %%PYTHON%%include/openturns/swig/GradientImplementation_doc.i @@ -1391,6 +1415,24 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/HMatrixParameters.i %%PYTHON%%include/openturns/swig/HMatrixParameters_doc.i %%PYTHON%%include/openturns/swig/HMatrix_doc.i +%%PYTHON%%include/openturns/swig/HSICEstimator.i +%%PYTHON%%include/openturns/swig/HSICEstimatorConditionalSensitivity.i +%%PYTHON%%include/openturns/swig/HSICEstimatorConditionalSensitivity_doc.i +%%PYTHON%%include/openturns/swig/HSICEstimatorGlobalSensitivity.i +%%PYTHON%%include/openturns/swig/HSICEstimatorGlobalSensitivity_doc.i +%%PYTHON%%include/openturns/swig/HSICEstimatorImplementation.i +%%PYTHON%%include/openturns/swig/HSICEstimatorImplementation_doc.i +%%PYTHON%%include/openturns/swig/HSICEstimatorTargetSensitivity.i +%%PYTHON%%include/openturns/swig/HSICEstimatorTargetSensitivity_doc.i +%%PYTHON%%include/openturns/swig/HSICEstimator_doc.i +%%PYTHON%%include/openturns/swig/HSICStat.i +%%PYTHON%%include/openturns/swig/HSICStatImplementation.i +%%PYTHON%%include/openturns/swig/HSICStatImplementation_doc.i +%%PYTHON%%include/openturns/swig/HSICStat_doc.i +%%PYTHON%%include/openturns/swig/HSICUStat.i +%%PYTHON%%include/openturns/swig/HSICUStat_doc.i +%%PYTHON%%include/openturns/swig/HSICVStat.i +%%PYTHON%%include/openturns/swig/HSICVStat_doc.i %%PYTHON%%include/openturns/swig/HaarWaveletFactory.i %%PYTHON%%include/openturns/swig/HaarWaveletFactory_doc.i %%PYTHON%%include/openturns/swig/HaltonSequence.i @@ -1431,6 +1473,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/ImportanceSamplingExperiment_doc.i %%PYTHON%%include/openturns/swig/IndependentCopula.i %%PYTHON%%include/openturns/swig/IndependentCopula_doc.i +%%PYTHON%%include/openturns/swig/IndependentMetropolisHastings.i +%%PYTHON%%include/openturns/swig/IndependentMetropolisHastings_doc.i %%PYTHON%%include/openturns/swig/IndicatorEvaluation.i %%PYTHON%%include/openturns/swig/IndicatorFunction.i %%PYTHON%%include/openturns/swig/IndicatorFunction_doc.i @@ -1485,6 +1529,16 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/IsotropicCovarianceModel_doc.i %%PYTHON%%include/openturns/swig/IteratedQuadrature.i %%PYTHON%%include/openturns/swig/IteratedQuadrature_doc.i +%%PYTHON%%include/openturns/swig/IterativeAlgorithm.i +%%PYTHON%%include/openturns/swig/IterativeAlgorithmImplementation.i +%%PYTHON%%include/openturns/swig/IterativeAlgorithmImplementation_doc.i +%%PYTHON%%include/openturns/swig/IterativeAlgorithm_doc.i +%%PYTHON%%include/openturns/swig/IterativeExtrema.i +%%PYTHON%%include/openturns/swig/IterativeExtrema_doc.i +%%PYTHON%%include/openturns/swig/IterativeMoments.i +%%PYTHON%%include/openturns/swig/IterativeMoments_doc.i +%%PYTHON%%include/openturns/swig/IterativeThresholdExceedance.i +%%PYTHON%%include/openturns/swig/IterativeThresholdExceedance_doc.i %%PYTHON%%include/openturns/swig/JacobiFactory.i %%PYTHON%%include/openturns/swig/JacobiFactory_doc.i %%PYTHON%%include/openturns/swig/JansenSensitivityAlgorithm.i @@ -1640,8 +1694,6 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/LowDiscrepancySequenceImplementation.i %%PYTHON%%include/openturns/swig/LowDiscrepancySequenceImplementation_doc.i %%PYTHON%%include/openturns/swig/LowDiscrepancySequence_doc.i -%%PYTHON%%include/openturns/swig/MCMC.i -%%PYTHON%%include/openturns/swig/MCMC_doc.i %%PYTHON%%include/openturns/swig/MarginalDistribution.i %%PYTHON%%include/openturns/swig/MarginalEvaluation.i %%PYTHON%%include/openturns/swig/MarginalGradient.i @@ -1692,6 +1744,10 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/MetaModelValidation_doc.i %%PYTHON%%include/openturns/swig/MethodOfMomentsFactory.i %%PYTHON%%include/openturns/swig/MethodOfMomentsFactory_doc.i +%%PYTHON%%include/openturns/swig/MetropolisHastings.i +%%PYTHON%%include/openturns/swig/MetropolisHastingsImplementation.i +%%PYTHON%%include/openturns/swig/MetropolisHastingsImplementation_doc.i +%%PYTHON%%include/openturns/swig/MetropolisHastings_doc.i %%PYTHON%%include/openturns/swig/MinCopula.i %%PYTHON%%include/openturns/swig/MinCopula_doc.i %%PYTHON%%include/openturns/swig/MinimumVolumeClassifier.i @@ -1720,6 +1776,10 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/MultinomialFactory.i %%PYTHON%%include/openturns/swig/MultinomialFactory_doc.i %%PYTHON%%include/openturns/swig/Multinomial_doc.i +%%PYTHON%%include/openturns/swig/NAIS.i +%%PYTHON%%include/openturns/swig/NAISResult.i +%%PYTHON%%include/openturns/swig/NAISResult_doc.i +%%PYTHON%%include/openturns/swig/NAIS_doc.i %%PYTHON%%include/openturns/swig/NLopt.i %%PYTHON%%include/openturns/swig/NLopt_doc.i %%PYTHON%%include/openturns/swig/NaiveEnclosingSimplex.i @@ -1833,6 +1893,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/P1LagrangeEvaluation_doc.i %%PYTHON%%include/openturns/swig/P1LagrangeInterpolation.i %%PYTHON%%include/openturns/swig/P1LagrangeInterpolation_doc.i +%%PYTHON%%include/openturns/swig/Pagmo.i +%%PYTHON%%include/openturns/swig/Pagmo_doc.i %%PYTHON%%include/openturns/swig/ParametricEvaluation.i %%PYTHON%%include/openturns/swig/ParametricFunction.i %%PYTHON%%include/openturns/swig/ParametricFunction_doc.i @@ -1949,6 +2011,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/RandomVector.i %%PYTHON%%include/openturns/swig/RandomVectorImplementation.i %%PYTHON%%include/openturns/swig/RandomVectorImplementation_doc.i +%%PYTHON%%include/openturns/swig/RandomVectorMetropolisHastings.i +%%PYTHON%%include/openturns/swig/RandomVectorMetropolisHastings_doc.i %%PYTHON%%include/openturns/swig/RandomVector_doc.i %%PYTHON%%include/openturns/swig/RandomWalk.i %%PYTHON%%include/openturns/swig/RandomWalkMetropolisHastings.i @@ -2131,6 +2195,8 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/TensorApproximationResult_doc.i %%PYTHON%%include/openturns/swig/TensorImplementation.i %%PYTHON%%include/openturns/swig/TensorImplementation_doc.i +%%PYTHON%%include/openturns/swig/TensorProductExperiment.i +%%PYTHON%%include/openturns/swig/TensorProductExperiment_doc.i %%PYTHON%%include/openturns/swig/Tensor_doc.i %%PYTHON%%include/openturns/swig/TensorizedCovarianceModel.i %%PYTHON%%include/openturns/swig/TensorizedCovarianceModel_doc.i @@ -2272,28 +2338,37 @@ include/openturns/csv_parser_state.hxx %%PYTHON%%include/openturns/swig/bayesian_module.i %%PYTHON%%include/openturns/swig/classification_module.i %%PYTHON%%include/openturns/swig/common_module.i +%%PYTHON%%include/openturns/swig/correlationanalysis_module.i %%PYTHON%%include/openturns/swig/diff_module.i %%PYTHON%%include/openturns/swig/dist_bundle1_module.i %%PYTHON%%include/openturns/swig/dist_bundle2_module.i %%PYTHON%%include/openturns/swig/dist_bundle3_module.i +%%PYTHON%%include/openturns/swig/distfunc_module.i %%PYTHON%%include/openturns/swig/experiment_module.i +%%PYTHON%%include/openturns/swig/fittingtest_module.i %%PYTHON%%include/openturns/swig/func_module.i %%PYTHON%%include/openturns/swig/geom_module.i %%PYTHON%%include/openturns/swig/graph_module.i +%%PYTHON%%include/openturns/swig/hypothesistest_module.i +%%PYTHON%%include/openturns/swig/iterative_statistics_module.i +%%PYTHON%%include/openturns/swig/linearmodeltest_module.i %%PYTHON%%include/openturns/swig/metamodel_module.i %%PYTHON%%include/openturns/swig/model_copula_module.i %%PYTHON%%include/openturns/swig/model_process_module.i +%%PYTHON%%include/openturns/swig/normalitytest_module.i %%PYTHON%%include/openturns/swig/optim_module.i %%PYTHON%%include/openturns/swig/orthogonalbasis_module.i %%PYTHON%%include/openturns/swig/randomvector_module.i %%PYTHON%%include/openturns/swig/simulation_module.i %%PYTHON%%include/openturns/swig/solver_module.i +%%PYTHON%%include/openturns/swig/specfunc_module.i %%PYTHON%%include/openturns/swig/statistics_module.i %%PYTHON%%include/openturns/swig/stattests_module.i %%PYTHON%%include/openturns/swig/testing_module.i %%PYTHON%%include/openturns/swig/transformation_module.i %%PYTHON%%include/openturns/swig/typ_module.i %%PYTHON%%include/openturns/swig/uncertainty_module.i +%%PYTHON%%include/openturns/swig/visualtest_module.i %%PYTHON%%include/openturns/swig/weightedexperiment_module.i lib/cmake/openturns/OpenTURNS-Targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/openturns/OpenTURNS-Targets.cmake @@ -2301,64 +2376,81 @@ 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