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Wed, 4 May 2022 20:32:22 GMT (envelope-from git) Date: Wed, 4 May 2022 20:32:22 GMT Message-Id: <202205042032.244KWM02052674@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Thierry Thomas Subject: git: 31c941c09e26 - main - devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in Continuous Time List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: thierry X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 31c941c09e26577b5dd107009766d7951ca10fd6 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by thierry: URL: https://cgit.FreeBSD.org/ports/commit/?id=31c941c09e26577b5dd107009766d7951ca10fd6 commit 31c941c09e26577b5dd107009766d7951ca10fd6 Author: Thierry Thomas AuthorDate: 2022-05-02 20:03:22 +0000 Commit: Thierry Thomas CommitDate: 2022-05-04 20:32:14 +0000 devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in Continuous Time --- devel/Makefile | 1 + devel/R-cran-msm/Makefile | 18 ++++++++++++++++++ devel/R-cran-msm/distinfo | 3 +++ devel/R-cran-msm/pkg-descr | 9 +++++++++ devel/R-cran-msm/pkg-plist | 40 ++++++++++++++++++++++++++++++++++++++++ 5 files changed, 71 insertions(+) diff --git a/devel/Makefile b/devel/Makefile index 26086cb3dea5..0a60bf7782e1 100644 --- a/devel/Makefile +++ b/devel/Makefile @@ -75,6 +75,7 @@ SUBDIR += R-cran-memoise SUBDIR += R-cran-microbenchmark SUBDIR += R-cran-mockery + SUBDIR += R-cran-msm SUBDIR += R-cran-optparse SUBDIR += R-cran-pak SUBDIR += R-cran-parallelly diff --git a/devel/R-cran-msm/Makefile b/devel/R-cran-msm/Makefile new file mode 100644 index 000000000000..1ac0548de6f2 --- /dev/null +++ b/devel/R-cran-msm/Makefile @@ -0,0 +1,18 @@ +# Created by: Thierry Thomas + +PORTNAME= msm +PORTVERSION= 1.6.9 +CATEGORIES= devel +DISTNAME= ${PORTNAME}_${DISTVERSION} + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Multi-State Markov and Hidden Markov Models in Continuous Time + +LICENSE= GPLv2+ + +RUN_DEPENDS= R-cran-expm>0:math/R-cran-expm \ + R-cran-mvtnorm>0:math/R-cran-mvtnorm + +USES= cran:compiles + +.include diff --git a/devel/R-cran-msm/distinfo b/devel/R-cran-msm/distinfo new file mode 100644 index 000000000000..0418c1abf2ca --- /dev/null +++ b/devel/R-cran-msm/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1651521129 +SHA256 (msm_1.6.9.tar.gz) = aefcd9bb40b0167311d088d6fe23fdf7aa35deaac0f8b47ef02377cff5577023 +SIZE (msm_1.6.9.tar.gz) = 847034 diff --git a/devel/R-cran-msm/pkg-descr b/devel/R-cran-msm/pkg-descr new file mode 100644 index 000000000000..529d5b1809e5 --- /dev/null +++ b/devel/R-cran-msm/pkg-descr @@ -0,0 +1,9 @@ +Functions for fitting continuous-time Markov and hidden Markov multi-state +models to longitudinal data. Designed for processes observed at arbitrary times +in continuous time (panel data) but some other observation schemes are +supported. Both Markov transition rates and the hidden Markov output process can +be modelled in terms of covariates, which may be constant or piecewise-constant +in time. + +WWW: https://cran.r-project.org/package=msm +WWW: https://github.com/chjackson/msm diff --git a/devel/R-cran-msm/pkg-plist b/devel/R-cran-msm/pkg-plist new file mode 100644 index 000000000000..600bfd804b3d --- /dev/null +++ b/devel/R-cran-msm/pkg-plist @@ -0,0 +1,40 @@ +%%R_MOD_DIR%%/CITATION +%%R_MOD_DIR%%/DESCRIPTION +%%R_MOD_DIR%%/INDEX +%%R_MOD_DIR%%/Meta/Rd.rds +%%R_MOD_DIR%%/Meta/data.rds +%%R_MOD_DIR%%/Meta/features.rds +%%R_MOD_DIR%%/Meta/hsearch.rds +%%R_MOD_DIR%%/Meta/links.rds +%%R_MOD_DIR%%/Meta/nsInfo.rds +%%R_MOD_DIR%%/Meta/package.rds +%%R_MOD_DIR%%/Meta/vignette.rds +%%R_MOD_DIR%%/NAMESPACE +%%R_MOD_DIR%%/NEWS +%%R_MOD_DIR%%/R/msm +%%R_MOD_DIR%%/R/msm.rdb +%%R_MOD_DIR%%/R/msm.rdx +%%R_MOD_DIR%%/data/Rdata.rdb +%%R_MOD_DIR%%/data/Rdata.rds +%%R_MOD_DIR%%/data/Rdata.rdx +%%R_MOD_DIR%%/doc/index.html +%%R_MOD_DIR%%/doc/msm-manual.R +%%R_MOD_DIR%%/doc/msm-manual.pdf +%%R_MOD_DIR%%/help/AnIndex +%%R_MOD_DIR%%/help/aliases.rds +%%R_MOD_DIR%%/help/msm.rdb +%%R_MOD_DIR%%/help/msm.rdx +%%R_MOD_DIR%%/help/paths.rds +%%R_MOD_DIR%%/html/00Index.html +%%R_MOD_DIR%%/html/R.css +%%R_MOD_DIR%%/libs/msm.so +%%R_MOD_DIR%%/tests/test_base.R +%%R_MOD_DIR%%/tests/testthat/helper.r +%%R_MOD_DIR%%/tests/testthat/test_analyticp.r +%%R_MOD_DIR%%/tests/testthat/test_datasumm.r +%%R_MOD_DIR%%/tests/testthat/test_deriv.r +%%R_MOD_DIR%%/tests/testthat/test_models.r +%%R_MOD_DIR%%/tests/testthat/test_models_hmm.r +%%R_MOD_DIR%%/tests/testthat/test_models_hmmmulti.r +%%R_MOD_DIR%%/tests/testthat/test_models_misc.r +%%R_MOD_DIR%%/tests/testthat/test_utils.r