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Sun, 1 May 2022 17:37:17 GMT (envelope-from git) Date: Sun, 1 May 2022 17:37:17 GMT Message-Id: <202205011737.241HbHFl075817@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 8db0b60850a5 - main - biology/py-mrcfile: New port: MRC file I/O library which is used in structural biology List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8db0b60850a52a1fb0030091485455e07f88912a Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=8db0b60850a52a1fb0030091485455e07f88912a commit 8db0b60850a52a1fb0030091485455e07f88912a Author: Yuri Victorovich AuthorDate: 2022-05-01 17:10:08 +0000 Commit: Yuri Victorovich CommitDate: 2022-05-01 17:37:04 +0000 biology/py-mrcfile: New port: MRC file I/O library which is used in structural biology --- biology/Makefile | 1 + biology/py-mrcfile/Makefile | 19 +++++++++++++++++++ biology/py-mrcfile/distinfo | 3 +++ biology/py-mrcfile/pkg-descr | 5 +++++ 4 files changed, 28 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 821cf358e8c3..7e9dd63dc6c6 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -161,6 +161,7 @@ SUBDIR += py-libsedml SUBDIR += py-loompy SUBDIR += py-macs2 + SUBDIR += py-mrcfile SUBDIR += py-multiqc SUBDIR += py-ont-fast5-api SUBDIR += py-orange3-bioinformatics diff --git a/biology/py-mrcfile/Makefile b/biology/py-mrcfile/Makefile new file mode 100644 index 000000000000..b1fd9370eec9 --- /dev/null +++ b/biology/py-mrcfile/Makefile @@ -0,0 +1,19 @@ +PORTNAME= mrcfile +DISTVERSION= 1.3.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= MRC file I/O library which is used in structural biology + +LICENSE= BSD3CLAUSE + +RUN_DEPENDS= ${PYNUMPY} + +USES= python +USE_PYTHON= distutils concurrent autoplist + +NO_ARCH= yes + +.include diff --git a/biology/py-mrcfile/distinfo b/biology/py-mrcfile/distinfo new file mode 100644 index 000000000000..c8c3f20f1d06 --- /dev/null +++ b/biology/py-mrcfile/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1651424205 +SHA256 (mrcfile-1.3.0.tar.gz) = 3a113042d24820b9dfc6902cb9d93bcbebdee22beb40552f2c35303ace4b0547 +SIZE (mrcfile-1.3.0.tar.gz) = 32627 diff --git a/biology/py-mrcfile/pkg-descr b/biology/py-mrcfile/pkg-descr new file mode 100644 index 000000000000..3e2b3851bfdc --- /dev/null +++ b/biology/py-mrcfile/pkg-descr @@ -0,0 +1,5 @@ +mrcfile is a Python implementation of the MRC2014 file +format, which is used in structural biology to store +image and volume data. + +WWW: https://github.com/ccpem/mrcfile