git: def66708ab5a - main - math/sundials: Update 5.7.0 -> 6.2.0
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Date: Mon, 20 Jun 2022 01:30:40 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=def66708ab5ae16a4f751b641fd60d60c63ee5fa
commit def66708ab5ae16a4f751b641fd60d60c63ee5fa
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-06-20 01:29:46 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-06-20 01:30:38 +0000
math/sundials: Update 5.7.0 -> 6.2.0
---
math/deal.ii/Makefile | 2 +-
math/mcsim/Makefile | 2 +-
math/octave/Makefile | 2 +-
math/sundials/Makefile | 23 ++++++------
math/sundials/distinfo | 6 +--
math/sundials/pkg-plist | 98 +++++++++++++++++++++++++------------------------
6 files changed, 67 insertions(+), 66 deletions(-)
diff --git a/math/deal.ii/Makefile b/math/deal.ii/Makefile
index 55b27f9a06ad..12ffd4698de7 100644
--- a/math/deal.ii/Makefile
+++ b/math/deal.ii/Makefile
@@ -1,7 +1,7 @@
PORTNAME= deal.II
DISTVERSIONPREFIX= v
DISTVERSION= 9.3.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
diff --git a/math/mcsim/Makefile b/math/mcsim/Makefile
index 117486f6ce4f..aa6385da12b0 100644
--- a/math/mcsim/Makefile
+++ b/math/mcsim/Makefile
@@ -2,7 +2,7 @@
PORTNAME= mcsim
PORTVERSION= 6.2.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= GNU
diff --git a/math/octave/Makefile b/math/octave/Makefile
index 782351cd4b61..1e6126abcac0 100644
--- a/math/octave/Makefile
+++ b/math/octave/Makefile
@@ -2,7 +2,7 @@
PORTNAME= octave
PORTVERSION= ${OCTAVE_VERSION}
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= GNU
diff --git a/math/sundials/Makefile b/math/sundials/Makefile
index 68fa68b80cbf..2649cccb2c2d 100644
--- a/math/sundials/Makefile
+++ b/math/sundials/Makefile
@@ -1,6 +1,5 @@
PORTNAME= sundials
-DISTVERSION= 5.7.0
-PORTREVISION= 1
+DISTVERSION= 6.2.0
CATEGORIES= math
MASTER_SITES= https://github.com/LLNL/sundials/releases/download/v${DISTVERSION}/
@@ -10,17 +9,18 @@ COMMENT= SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
-USES= cmake:noninja fortran localbase:ldflags python:build # ninja doesn't support fortran
+USES= cmake:testing fortran localbase:ldflags python:build
USE_LDCONFIG= yes
-CMAKE_ARGS= -DENABLE_PTHREAD:BOOL=ON \
- -DBUILD_STATIC_LIBS:BOOL=OFF
+CMAKE_ARGS= -DENABLE_PTHREAD:BOOL=ON \
+ -DBUILD_STATIC_LIBS:BOOL=OFF
+CMAKE_OFF= EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90
+CMAKE_TESTING_ON= SUNDIALS_TEST_UNITTESTS \
+ EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90
FCFLAGS:= ${FFLAGS} # project checks that these flags are equal
-TEST_TARGET= test
-
-OPTIONS_DEFINE= BLAS EXAMPLES LAPACK MPI # OPENMP detection is broken in cmake: https://gitlab.kitware.com/cmake/cmake/issues/17474
+OPTIONS_DEFINE= BLAS LAPACK MPI # OPENMP detection is broken in cmake: https://gitlab.kitware.com/cmake/cmake/issues/17474; EXAMPLES are broken on some systems due to CLOCK_MONOTONIC
#OPTIONS_DEFAULT= LAPACK # LAPACK is broken
OPTIONS_GROUP= VECTORS
OPTIONS_GROUP_VECTORS= HYPRE PETSC
@@ -32,8 +32,9 @@ BLAS_CMAKE_BOOL= BLAS_ENABLE
BLAS_USES= blaslapack:openblas
BLAS_CMAKE_ON= -DFREEBSD_GCC_DIR:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT:S/.//} # assumes that fortran:gcc is used
-EXAMPLES_CMAKE_BOOL= EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90
-EXAMPLES_CMAKE_ON= -DEXAMPLES_INSTALL_PATH=${EXAMPLESDIR}
+#EXAMPLES_CMAKE_BOOL= EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90
+#EXAMPLES_CMAKE_ON= -DEXAMPLES_INSTALL_PATH=${EXAMPLESDIR}
+#PORTEXAMPLES= *
HYPRE_DESC= HYPRE vectors support (also enables MPI)
HYPRE_CMAKE_BOOL= ENABLE_HYPRE
@@ -63,8 +64,6 @@ PETSC_IMPLIES= MPI
PETSC_PREVENTS= LAPACK # error: Incompatible sunindextype for LAPACK; disable LAPACK and rebuild
PETSC_BROKEN= ERROR: PETSc not functional due to index size mismatch: SUNDIALS_INDEX_SIZE=64, but PETSc was built with 32-bit indices
-PORTEXAMPLES= *
-
post-install:
@${RM} ${STAGEDIR}${PREFIX}/include/sundials/LICENSE
diff --git a/math/sundials/distinfo b/math/sundials/distinfo
index a10e2e95c308..928e273fae9b 100644
--- a/math/sundials/distinfo
+++ b/math/sundials/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1630044758
-SHA256 (sundials-5.7.0.tar.gz) = 48da7baa8152ddb22aed1b02d82d1dbb4fbfea22acf67634011aa0303a100a43
-SIZE (sundials-5.7.0.tar.gz) = 22612286
+TIMESTAMP = 1655680730
+SHA256 (sundials-6.2.0.tar.gz) = 195d5593772fc483f63f08794d79e4bab30c2ec58e6ce4b0fb6bcc0e0c48f31d
+SIZE (sundials-6.2.0.tar.gz) = 82410068
diff --git a/math/sundials/pkg-plist b/math/sundials/pkg-plist
index 0b3cc85473cc..87960a1f948c 100644
--- a/math/sundials/pkg-plist
+++ b/math/sundials/pkg-plist
@@ -22,6 +22,7 @@ include/cvodes/cvodes_bbdpre.h
include/cvodes/cvodes_diag.h
include/cvodes/cvodes_direct.h
include/cvodes/cvodes_ls.h
+include/cvodes/cvodes_proj.h
include/cvodes/cvodes_spils.h
include/ida/ida.h
include/ida/ida_bbdpre.h
@@ -49,21 +50,21 @@ include/nvector/nvector_serial.h
include/sundials/NOTICE
include/sundials/sundials_band.h
include/sundials/sundials_config.h
+include/sundials/sundials_context.h
include/sundials/sundials_dense.h
include/sundials/sundials_direct.h
include/sundials/sundials_export.h
-include/sundials/sundials_fconfig.h
-include/sundials/sundials_fnvector.h
-include/sundials/sundials_futils.h
include/sundials/sundials_iterative.h
%%LAPACK%%include/sundials/sundials_lapack.h
include/sundials/sundials_linearsolver.h
+include/sundials/sundials_logger.h
include/sundials/sundials_math.h
include/sundials/sundials_matrix.h
include/sundials/sundials_memory.h
%%MPI%%include/sundials/sundials_mpi_types.h
include/sundials/sundials_nonlinearsolver.h
include/sundials/sundials_nvector.h
+include/sundials/sundials_profiler.h
include/sundials/sundials_types.h
include/sundials/sundials_version.h
include/sunlinsol/sunlinsol_band.h
@@ -78,6 +79,7 @@ include/sunlinsol/sunlinsol_sptfqmr.h
include/sunmatrix/sunmatrix_band.h
include/sunmatrix/sunmatrix_dense.h
include/sunmatrix/sunmatrix_sparse.h
+include/sunmemory/sunmemory_system.h
include/sunnonlinsol/sunnonlinsol_fixedpoint.h
include/sunnonlinsol/sunnonlinsol_newton.h
lib/cmake/sundials/SUNDIALSConfig.cmake
@@ -85,54 +87,54 @@ lib/cmake/sundials/SUNDIALSConfigVersion.cmake
lib/cmake/sundials/SUNDIALSTargets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/sundials/SUNDIALSTargets.cmake
lib/libsundials_arkode.so
-lib/libsundials_arkode.so.4
-lib/libsundials_arkode.so.4.7.0
+lib/libsundials_arkode.so.5
+lib/libsundials_arkode.so.5.2.0
lib/libsundials_cvode.so
-lib/libsundials_cvode.so.5
-lib/libsundials_cvode.so.5.7.0
+lib/libsundials_cvode.so.6
+lib/libsundials_cvode.so.6.2.0
lib/libsundials_cvodes.so
-lib/libsundials_cvodes.so.5
-lib/libsundials_cvodes.so.5.7.0
+lib/libsundials_cvodes.so.6
+lib/libsundials_cvodes.so.6.2.0
lib/libsundials_generic.so
-lib/libsundials_generic.so.5
-lib/libsundials_generic.so.5.7.0
+lib/libsundials_generic.so.6
+lib/libsundials_generic.so.6.2.0
lib/libsundials_ida.so
-lib/libsundials_ida.so.5
-lib/libsundials_ida.so.5.7.0
+lib/libsundials_ida.so.6
+lib/libsundials_ida.so.6.2.0
lib/libsundials_idas.so
-lib/libsundials_idas.so.4
-lib/libsundials_idas.so.4.7.0
+lib/libsundials_idas.so.5
+lib/libsundials_idas.so.5.2.0
lib/libsundials_kinsol.so
-lib/libsundials_kinsol.so.5
-lib/libsundials_kinsol.so.5.7.0
+lib/libsundials_kinsol.so.6
+lib/libsundials_kinsol.so.6.2.0
lib/libsundials_nvecmanyvector.so
-lib/libsundials_nvecmanyvector.so.5
-lib/libsundials_nvecmanyvector.so.5.7.0
+lib/libsundials_nvecmanyvector.so.6
+lib/libsundials_nvecmanyvector.so.6.2.0
%%MPI%%lib/libsundials_nvecmpimanyvector.so
-%%MPI%%lib/libsundials_nvecmpimanyvector.so.5
-%%MPI%%lib/libsundials_nvecmpimanyvector.so.5.7.0
+%%MPI%%lib/libsundials_nvecmpimanyvector.so.6
+%%MPI%%lib/libsundials_nvecmpimanyvector.so.6.2.0
%%MPI%%lib/libsundials_nvecmpiplusx.so
-%%MPI%%lib/libsundials_nvecmpiplusx.so.5
-%%MPI%%lib/libsundials_nvecmpiplusx.so.5.7.0
+%%MPI%%lib/libsundials_nvecmpiplusx.so.6
+%%MPI%%lib/libsundials_nvecmpiplusx.so.6.2.0
%%MPI%%lib/libsundials_nvecparallel.so
-%%MPI%%lib/libsundials_nvecparallel.so.5
-%%MPI%%lib/libsundials_nvecparallel.so.5.7.0
+%%MPI%%lib/libsundials_nvecparallel.so.6
+%%MPI%%lib/libsundials_nvecparallel.so.6.2.0
%%HYPRE%%lib/libsundials_nvecparhyp.so
-%%HYPRE%%lib/libsundials_nvecparhyp.so.5
-%%HYPRE%%lib/libsundials_nvecparhyp.so.5.7.0
+%%HYPRE%%lib/libsundials_nvecparhyp.so.6
+%%HYPRE%%lib/libsundials_nvecparhyp.so.6.2.0
%%PETSC%%lib/libsundials_nvecpetsc.so
-%%PETSC%%lib/libsundials_nvecpetsc.so.3
-%%PETSC%%lib/libsundials_nvecpetsc.so.3.1.2
+%%PETSC%%lib/libsundials_nvecpetsc.so.6
+%%PETSC%%lib/libsundials_nvecpetsc.so.6.2.0
lib/libsundials_nvecpthreads.so
-lib/libsundials_nvecpthreads.so.5
-lib/libsundials_nvecpthreads.so.5.7.0
+lib/libsundials_nvecpthreads.so.6
+lib/libsundials_nvecpthreads.so.6.2.0
lib/libsundials_nvecserial.so
-lib/libsundials_nvecserial.so.5
-lib/libsundials_nvecserial.so.5.7.0
+lib/libsundials_nvecserial.so.6
+lib/libsundials_nvecserial.so.6.2.0
lib/libsundials_sunlinsolband.so
-lib/libsundials_sunlinsolband.so.3.7.0
+lib/libsundials_sunlinsolband.so.4.2.0
lib/libsundials_sunlinsoldense.so
-lib/libsundials_sunlinsoldense.so.3.7.0
+lib/libsundials_sunlinsoldense.so.4.2.0
%%LAPACK%%lib/libsundials_sunlinsollapackband.so
%%LAPACK%%lib/libsundials_sunlinsollapackband.so.%%SHLX1%%
%%LAPACK%%lib/libsundials_sunlinsollapackband.so.%%SHLX3%%
@@ -140,25 +142,25 @@ lib/libsundials_sunlinsoldense.so.3.7.0
%%LAPACK%%lib/libsundials_sunlinsollapackdense.so.%%SHLX1%%
%%LAPACK%%lib/libsundials_sunlinsollapackdense.so.%%SHLX3%%
lib/libsundials_sunlinsolpcg.so
-lib/libsundials_sunlinsolpcg.so.3.7.0
+lib/libsundials_sunlinsolpcg.so.4.2.0
lib/libsundials_sunlinsolspbcgs.so
-lib/libsundials_sunlinsolspbcgs.so.3.7.0
+lib/libsundials_sunlinsolspbcgs.so.4.2.0
lib/libsundials_sunlinsolspfgmr.so
-lib/libsundials_sunlinsolspfgmr.so.3.7.0
+lib/libsundials_sunlinsolspfgmr.so.4.2.0
lib/libsundials_sunlinsolspgmr.so
-lib/libsundials_sunlinsolspgmr.so.3.7.0
+lib/libsundials_sunlinsolspgmr.so.4.2.0
lib/libsundials_sunlinsolsptfqmr.so
-lib/libsundials_sunlinsolsptfqmr.so.3.7.0
+lib/libsundials_sunlinsolsptfqmr.so.4.2.0
lib/libsundials_sunmatrixband.so
-lib/libsundials_sunmatrixband.so.3
-lib/libsundials_sunmatrixband.so.3.7.0
+lib/libsundials_sunmatrixband.so.4
+lib/libsundials_sunmatrixband.so.4.2.0
lib/libsundials_sunmatrixdense.so
-lib/libsundials_sunmatrixdense.so.3
-lib/libsundials_sunmatrixdense.so.3.7.0
+lib/libsundials_sunmatrixdense.so.4
+lib/libsundials_sunmatrixdense.so.4.2.0
lib/libsundials_sunmatrixsparse.so
-lib/libsundials_sunmatrixsparse.so.3
-lib/libsundials_sunmatrixsparse.so.3.7.0
+lib/libsundials_sunmatrixsparse.so.4
+lib/libsundials_sunmatrixsparse.so.4.2.0
lib/libsundials_sunnonlinsolfixedpoint.so
-lib/libsundials_sunnonlinsolfixedpoint.so.2.7.0
+lib/libsundials_sunnonlinsolfixedpoint.so.3.2.0
lib/libsundials_sunnonlinsolnewton.so
-lib/libsundials_sunnonlinsolnewton.so.2.7.0
+lib/libsundials_sunnonlinsolnewton.so.3.2.0