git: 4f0c26c304e8 - main - math/combblas: Update 1.6.2 -> 2.0.0

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Fri, 15 Jul 2022 17:42:17 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=4f0c26c304e87ca5271983bc6dd9bab2354a49fc

commit 4f0c26c304e87ca5271983bc6dd9bab2354a49fc
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-07-15 17:41:42 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-07-15 17:42:15 +0000

    math/combblas: Update 1.6.2 -> 2.0.0
---
 math/combblas/Makefile                             | 13 ++++++------
 math/combblas/distinfo                             |  6 +++---
 math/combblas/files/extra-patch-CMakeLists.txt     | 24 ----------------------
 ...ipartiteMatchings_ApproxWeightPerfectMatching.h | 22 ++++++++++++++++++++
 ...eshCode_graph500__2D__SC11_src_create__graph.cc | 11 ++++++++++
 .../patch-include_CombBLAS_FullyDistSpVec.cpp      | 13 ++++++++++++
 math/combblas/pkg-plist                            |  5 +++++
 7 files changed, 60 insertions(+), 34 deletions(-)

diff --git a/math/combblas/Makefile b/math/combblas/Makefile
index e9e54af3b90f..8e5b71aea567 100644
--- a/math/combblas/Makefile
+++ b/math/combblas/Makefile
@@ -1,9 +1,7 @@
 PORTNAME=	CombBLAS
-DISTVERSION=	1.6.2
-PORTREVISION=	5
+DISTVERSIONPREFIX=	v
+DISTVERSION=	2.0.0
 CATEGORIES=	math
-MASTER_SITES=	https://people.eecs.berkeley.edu/~aydin/${PORTNAME}_FILES/
-DISTNAME=	${PORTNAME}_beta_${DISTVERSION:S/.//:S/./_/}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Combinatorial BLAS library: an extensible parallel graph library
@@ -17,12 +15,13 @@ ONLY_FOR_ARCHS_REASON=	fails to build: uses x86 asm
 LIB_DEPENDS=	libmpi.so:net/mpich
 RUN_DEPENDS=	${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so.1:lang/gcc${GCC_DEFAULT} # because of the link flags induced by mpich
 
-USES=		cmake compiler:c++14-lang localbase:ldflags tar:tgz
+USES=		cmake:testing compiler:c++14-lang localbase:ldflags tar:tgz
 USE_LDCONFIG=	yes
 
+USE_GITHUB=	yes
+GH_ACCOUNT=	PASSIONLab
+
 CMAKE_ON=	BUILD_SHARED_LIBS
-EXTRA_PATCHES=	${EXTRA_PATCHES_${CHOSEN_COMPILER_TYPE}}
-EXTRA_PATCHES_clang=	${FILESDIR}/extra-patch-CMakeLists.txt
 
 post-extract:
 	@cd ${WRKSRC}/include && ${RM} .DS_Store ._.DS_Store CombBLAS/._CombBLAS.h
diff --git a/math/combblas/distinfo b/math/combblas/distinfo
index f23d63b8ea5a..b4f210f5ee3f 100644
--- a/math/combblas/distinfo
+++ b/math/combblas/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1544940787
-SHA256 (CombBLAS_beta_16_2.tgz) = 2a35c725606f18d010c110c66814b6558dae26f6807ac01c843c788fdb5b3ca9
-SIZE (CombBLAS_beta_16_2.tgz) = 1555398
+TIMESTAMP = 1657902673
+SHA256 (PASSIONLab-CombBLAS-v2.0.0_GH0.tar.gz) = 632a94201a042a2a9aa86803f50ee38b7bf0aa1cfef6ba0eb34ea4007f79a679
+SIZE (PASSIONLab-CombBLAS-v2.0.0_GH0.tar.gz) = 43776896
diff --git a/math/combblas/files/extra-patch-CMakeLists.txt b/math/combblas/files/extra-patch-CMakeLists.txt
deleted file mode 100644
index 052ff9fee6fd..000000000000
--- a/math/combblas/files/extra-patch-CMakeLists.txt
+++ /dev/null
@@ -1,24 +0,0 @@
---- CMakeLists.txt.orig	2018-12-16 07:56:08 UTC
-+++ CMakeLists.txt
-@@ -23,7 +23,11 @@ target_include_directories(CombBLAS PRIV
- 
- # MPI and OpenMP dependencies
- find_package(MPI REQUIRED)
--find_package(OpenMP REQUIRED)
-+#find_package(OpenMP REQUIRED)
-+set(OPENMP_FOUND TRUE)
-+set(OpenMP_CXX_FOUND TRUE)
-+set(OpenMP_CXX_FLAGS "")
-+set(OpenMP_LINK_FLAGS "-lomp")
- 
- if(TARGET MPI::MPI_CXX) # Use target if available (cmake >= 3.9)
-   target_link_libraries(CombBLAS PUBLIC MPI::MPI_CXX)
-@@ -40,7 +44,7 @@ if(OPENMP_FOUND OR OpenMP_CXX_FOUND)
-     target_link_libraries(CombBLAS PUBLIC OpenMP::OpenMP_CXX)
-   else()
-     target_compile_options(CombBLAS PUBLIC "${OpenMP_CXX_FLAGS}")
--    target_link_libraries(CombBLAS PUBLIC "${OpenMP_CXX_FLAGS}")
-+    target_link_libraries(CombBLAS PUBLIC "${OpenMP_LINK_FLAGS}")
-   endif()
- endif()
- 
diff --git a/math/combblas/files/patch-Applications_BipartiteMatchings_ApproxWeightPerfectMatching.h b/math/combblas/files/patch-Applications_BipartiteMatchings_ApproxWeightPerfectMatching.h
new file mode 100644
index 000000000000..eafeb4939e62
--- /dev/null
+++ b/math/combblas/files/patch-Applications_BipartiteMatchings_ApproxWeightPerfectMatching.h
@@ -0,0 +1,22 @@
+--- Applications/BipartiteMatchings/ApproxWeightPerfectMatching.h.orig	2022-07-15 16:38:29 UTC
++++ Applications/BipartiteMatchings/ApproxWeightPerfectMatching.h
+@@ -12,8 +12,8 @@
+ #include "CombBLAS/CombBLAS.h"
+ #include "BPMaximalMatching.h"
+ #include "BPMaximumMatching.h"
+-#include <parallel/algorithm>
+-#include <parallel/numeric>
++#include <algorithm>
++//#include <parallel/numeric>
+ #include <memory>
+ #include <limits>
+ 
+@@ -563,7 +563,7 @@ std::vector< std::tuple<IT,IT,IT,NT> > Phase2(const AW
+     double tstart = MPI_Wtime();
+     
+     // Step 1: Sort for effecient searching of indices
+-    __gnu_parallel::sort(recvTuples.begin(), recvTuples.end());
++    sort(recvTuples.begin(), recvTuples.end());
+     std::vector<std::vector<std::tuple<IT,IT, IT, NT>>> tempTuples1 (param.nprocs);
+     
+     std::vector<int> sendcnt(param.nprocs,0); // number items to be sent to each processor
diff --git a/math/combblas/files/patch-KameshCode_graph500__2D__SC11_src_create__graph.cc b/math/combblas/files/patch-KameshCode_graph500__2D__SC11_src_create__graph.cc
new file mode 100644
index 000000000000..2624fbc5e91e
--- /dev/null
+++ b/math/combblas/files/patch-KameshCode_graph500__2D__SC11_src_create__graph.cc
@@ -0,0 +1,11 @@
+--- KameshCode/graph500_2D_SC11/src/create_graph.cc.orig	2022-07-15 16:38:12 UTC
++++ KameshCode/graph500_2D_SC11/src/create_graph.cc
+@@ -16,7 +16,7 @@ extern "C" {
+ #define USE_GNU_PARALLELMODE 0
+ 
+ #if USE_GNU_PARALLELMODE
+-#include <parallel/algorithm>
++#include <algorithm>
+ #endif
+ 
+ #define TIME_GRAPHCREATE_STEPS 0
diff --git a/math/combblas/files/patch-include_CombBLAS_FullyDistSpVec.cpp b/math/combblas/files/patch-include_CombBLAS_FullyDistSpVec.cpp
new file mode 100644
index 000000000000..ea23d456a579
--- /dev/null
+++ b/math/combblas/files/patch-include_CombBLAS_FullyDistSpVec.cpp
@@ -0,0 +1,13 @@
+--- include/CombBLAS/FullyDistSpVec.cpp.orig	2022-07-15 16:37:18 UTC
++++ include/CombBLAS/FullyDistSpVec.cpp
+@@ -37,8 +37,8 @@
+ #include <sys/stat.h>
+ 
+ #ifdef GNU_PARALLEL
+-#include <parallel/algorithm>
+-#include <parallel/numeric>
++#include <algorithm>
++//#include <parallel/numeric>
+ #endif
+ 
+ #include "usort/parUtils.h"
diff --git a/math/combblas/pkg-plist b/math/combblas/pkg-plist
index 476c6d096f06..245809aa68f5 100644
--- a/math/combblas/pkg-plist
+++ b/math/combblas/pkg-plist
@@ -2,8 +2,10 @@ include/CombBLAS/BFSFriends.h
 include/CombBLAS/BitMap.h
 include/CombBLAS/BitMapCarousel.h
 include/CombBLAS/BitMapFringe.h
+include/CombBLAS/BlockSpGEMM.h
 include/CombBLAS/CombBLAS.h
 include/CombBLAS/CommGrid.h
+include/CombBLAS/CommGrid3D.h
 include/CombBLAS/Compare.h
 include/CombBLAS/Deleter.h
 include/CombBLAS/DenseParMat.cpp
@@ -15,6 +17,7 @@ include/CombBLAS/FileHeader.h
 include/CombBLAS/Friends.h
 include/CombBLAS/FullyDist.h
 include/CombBLAS/FullyDistSpVec.cpp
+include/CombBLAS/FullyDistSpVec.cpp.orig
 include/CombBLAS/FullyDistSpVec.h
 include/CombBLAS/FullyDistVec.cpp
 include/CombBLAS/FullyDistVec.h
@@ -61,6 +64,8 @@ include/CombBLAS/SpParHelper.cpp
 include/CombBLAS/SpParHelper.h
 include/CombBLAS/SpParMat.cpp
 include/CombBLAS/SpParMat.h
+include/CombBLAS/SpParMat3D.cpp
+include/CombBLAS/SpParMat3D.h
 include/CombBLAS/SpTuples.cpp
 include/CombBLAS/SpTuples.h
 include/CombBLAS/StackEntry.h