From nobody Fri Jul 15 02:45:55 2022 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4LkbMR6LTWz4Wc2c; Fri, 15 Jul 2022 02:45:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4LkbMR5r7dz42FQ; Fri, 15 Jul 2022 02:45:55 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1657853155; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; 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Fri, 15 Jul 2022 02:45:55 GMT (envelope-from git) Date: Fri, 15 Jul 2022 02:45:55 GMT Message-Id: <202207150245.26F2jthu015713@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 2f374bcdfe52 - main - biology/py-pysam: Broken on arm64 and riscv64 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2f374bcdfe524d910349e06d52bde62047650b41 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2f374bcdfe524d910349e06d52bde62047650b41 commit 2f374bcdfe524d910349e06d52bde62047650b41 Author: Yuri Victorovich AuthorDate: 2022-07-15 02:44:45 +0000 Commit: Yuri Victorovich CommitDate: 2022-07-15 02:45:53 +0000 biology/py-pysam: Broken on arm64 and riscv64 Reported by: fallout --- biology/py-pysam/Makefile | 3 +++ 1 file changed, 3 insertions(+) diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index d98fc9f8f29a..a000663bc8a6 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -10,6 +10,9 @@ COMMENT= Python module for reading, manipulating and writing genomic data sets LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING +BROKEN_arm64= conflicting symbol (libchtslib libcsamtools ...) : $d.6 +BROKEN_riscv6= conflicting symbol (libchtslib libcsamtools ...): .Lline_table_start0 + USES= gmake python:3.6-3.9 USE_PYTHON= autoplist distutils cython cython_run