From nobody Sat Aug 06 17:29:42 2022 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4M0Tx26c6Nz4YLB7; Sat, 6 Aug 2022 17:29:42 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4M0Tx263DHz3Yt2; Sat, 6 Aug 2022 17:29:42 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1659806982; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jcTwvGoaNQ7vRp6166a33SvEYKJrgPZ+jF+AcFjFEYI=; b=SJ1jVJzcCmTekhLLXbaIEgZ6G44YqmJX7zIKD2CtqkmiayJEID1/OA1mJMe0TPonqlg0ih Uga4vTD4icEL6y3HMq+QIdW7SaPFrUuI5wgcAdv/d0UJ+ryyIXHAcEPwvr+3yCVF8O7mFH qkf9Vvk8pzsMKC0NfCG0at8byRGNWZxjqrHjX6pLBsxA2kcgfjGQq9/AHRMXMvC/I8odvX TpLZ1yHO+SJOKsc+wV/M5g6IWF1e5pfQLGChweVwRSJyKhoaNUFuLHQF+NtTqRdHpZzoY0 gTh97D1HOAKFRPmOh7032GzCNRq6G0fRs46M0HxoixsyL4SezpaDGriKwj7QbA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4M0Tx24nkXzgxL; Sat, 6 Aug 2022 17:29:42 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 276HTg6T051126; Sat, 6 Aug 2022 17:29:42 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 276HTgE9051125; Sat, 6 Aug 2022 17:29:42 GMT (envelope-from git) Date: Sat, 6 Aug 2022 17:29:42 GMT Message-Id: <202208061729.276HTgE9051125@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 204bf4f79bb3 - main - math/py-umap-learn: New port: Uniform Manifold Approximation and Projection List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 204bf4f79bb3dae6cf25004bcdde6a74d84fafd3 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1659806982; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jcTwvGoaNQ7vRp6166a33SvEYKJrgPZ+jF+AcFjFEYI=; b=BewvjexXibjE5nObXnLY9jSBCUyqfXJa4GwdJJhGEO0Y9MLHOC0ZeMo99p9PLwsvztSgdZ UzESiQ9cElvIIwCmGLQcPbiyJmnPn5izuEEdeOsbI5Zy03QeP05+ZDzH0mfzsRQqT+fgZA E8sr/NEcOOc9CdZpZYeKCrWQE/IkoIGpZq+H99wsvfTNY04DTE/OMViXCsWEcTUDr9X5hh e/QkH4Z+pql8pg76GFV7xPODP6n3yMNKWenKQS+xIeL0Nh8A8kIG7io6Kb9fgiqxqLPoPd scMmrZaZBgmWLi0nuEgU53Rc97KEwO15TA2tVOU5g3rH53HcE8vXBRlJ0895TA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1659806982; a=rsa-sha256; cv=none; b=LfGRugTfWY7JgGByVNYeA/wLjVOZzRZeWV6gtgAVqj2rMdVvmnMfG3294u4+wtAY103CQf yjLTwFWkSFYT3s2Fyv7koA+cZuLdCgvi0LW3RzlFKFADcijLsMXc6t3m9+Y5dV4JeSnybk /4oCrt53BxetRaux/iiAyYfnGRkUDzMn6jbaonjnEXHuMm/eD+ORZHrZ+o+I4Ae7B5Jt96 0Y/Qxww4Y9l8JBAbGirQbsTmduBA5D9fLn6kerG32Y6f1SES3fav8ZSAR3/RC9kVPgxVeF tcmxt2CelPX1d1wZincm5EB5aSY7Tx0ZTEP20yg2y9OV1VPnkXlULApw26G+EA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=204bf4f79bb3dae6cf25004bcdde6a74d84fafd3 commit 204bf4f79bb3dae6cf25004bcdde6a74d84fafd3 Author: Yuri Victorovich AuthorDate: 2022-08-06 17:10:03 +0000 Commit: Yuri Victorovich CommitDate: 2022-08-06 17:25:33 +0000 math/py-umap-learn: New port: Uniform Manifold Approximation and Projection --- math/Makefile | 1 + math/py-umap-learn/Makefile | 24 ++++++++++++++++++++++++ math/py-umap-learn/distinfo | 3 +++ math/py-umap-learn/pkg-descr | 9 +++++++++ 4 files changed, 37 insertions(+) diff --git a/math/Makefile b/math/Makefile index b81548a27218..39f6fafd12bd 100644 --- a/math/Makefile +++ b/math/Makefile @@ -984,6 +984,7 @@ SUBDIR += py-timple SUBDIR += py-topologic SUBDIR += py-triangle + SUBDIR += py-umap-learn SUBDIR += py-uncertainties SUBDIR += py-unyt SUBDIR += py-vincenty diff --git a/math/py-umap-learn/Makefile b/math/py-umap-learn/Makefile new file mode 100644 index 000000000000..2b8aaa06ab1b --- /dev/null +++ b/math/py-umap-learn/Makefile @@ -0,0 +1,24 @@ +PORTNAME= umap-learn +DISTVERSION= 0.5.3 +CATEGORIES= math python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Uniform Manifold Approximation and Projection + +LICENSE= BSD3CLAUSE + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numba>=0.49:devel/py-numba@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}pynndescent>=0.5:math/py-pynndescent@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.22:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=1.0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>=3.4.0:misc/py-tqdm@${PY_FLAVOR} + +USES= python:3.6+ +USE_PYTHON= distutils autoplist pytest + +NO_ARCH= yes + +.include diff --git a/math/py-umap-learn/distinfo b/math/py-umap-learn/distinfo new file mode 100644 index 000000000000..b635e5ad4192 --- /dev/null +++ b/math/py-umap-learn/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1659803954 +SHA256 (umap-learn-0.5.3.tar.gz) = dbd57cb181c2b66d238acb5635697526bf24c798082daed0cf9b87f6a3a6c0c7 +SIZE (umap-learn-0.5.3.tar.gz) = 88193 diff --git a/math/py-umap-learn/pkg-descr b/math/py-umap-learn/pkg-descr new file mode 100644 index 000000000000..b3f23e964533 --- /dev/null +++ b/math/py-umap-learn/pkg-descr @@ -0,0 +1,9 @@ +Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction +technique that can be used for visualisation similarly to t-SNE, but also for +general non-linear dimension reduction. The algorithm is founded on three +assumptions about the data: +* The data is uniformly distributed on a Riemannian manifold; +* The Riemannian metric is locally constant (or can be approximated as such); +* The manifold is locally connected. + +WWW: https://github.com/lmcinnes/umap