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(8.16.1/8.16.1) with ESMTP id 23T3PN80040907; Fri, 29 Apr 2022 03:25:23 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 23T3PNqJ040906; Fri, 29 Apr 2022 03:25:23 GMT (envelope-from git) Date: Fri, 29 Apr 2022 03:25:23 GMT Message-Id: <202204290325.23T3PNqJ040906@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 57cd6c19b55c - main - science/py-hoomd-blue: Update 3.0.1 -> 3.1.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 57cd6c19b55cf6e543f9fafa1dd25237559d53b0 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1651202723; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=eutFD9ZiYv0IOF1ZEA78Q907+F5aRAZsAyZNGUnFi+I=; b=L29/ltF98cW5ceOuawkC3XoCRjCZJw0hgoTEnD1jIuasAS/VGhdVlfr6JM+hYoCvCSy24s KEtbnjXwlUjpQ7h0OK7edU+W10faFPAnbObXdBQqmPhGr46+rdAGXS03zyv1KfqLiqX9mG 6282KZjjdJdUrCBufM8C7hpD5aj5Z64rftXuFvv6heHUKZlaB/FyWSGQM1aZg+K2jfbYri MzB4QA/UKGsgAi5Y2GVkjfa4v9Rp4EaqoxoVbVRJ/1/joi0fL76O6wmjviAHbM4qhOx9rm z9qyBh63Duuiu+1sEZoYtEAEhobS4GHyacVOQfD0AaTjPeE0c4KOyzb7455Wwg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1651202723; a=rsa-sha256; cv=none; b=t71wOx762EOtcCcPAM2KTbia9qOQaxca9ZA6osrGCPXwujTZLHFZlXwskPF44MNiLfshqi Ni93Z8HaW0T2cXl5aqpkF3ZToFtZ3v/dfD2ND/fUVbPjdoJsKwXaqW1nFk4iBoDe14TDYp 50Gw5qfM24EXRoH3m+MIlqtwfJsGS9gPMPHyD5FSNDXs9FI1bhgxxtvroqqyzhRczEwIp2 JhkumnVw7m8WvKbNylM4TDCyOoQMBj2Q0Mcw2BvM9wCIn5VDc73ps0En4/AVTAOjehyXHD DoZT6iItIoD3nzx+hnSC5MxAq/Qe9935n05HvEFYRfb3hK8HsIkBZQzYzmX2AQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=57cd6c19b55cf6e543f9fafa1dd25237559d53b0 commit 57cd6c19b55cf6e543f9fafa1dd25237559d53b0 Author: Yuri Victorovich AuthorDate: 2022-04-29 03:24:31 +0000 Commit: Yuri Victorovich CommitDate: 2022-04-29 03:25:15 +0000 science/py-hoomd-blue: Update 3.0.1 -> 3.1.0 Reported by: portscout --- science/py-hoomd-blue/Makefile | 4 ++-- science/py-hoomd-blue/distinfo | 6 +++--- science/py-hoomd-blue/pkg-plist | 24 ++++++++++++++++-------- 3 files changed, 21 insertions(+), 13 deletions(-) diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile index 67c574283389..a40c45e24edd 100644 --- a/science/py-hoomd-blue/Makefile +++ b/science/py-hoomd-blue/Makefile @@ -1,6 +1,6 @@ PORTNAME= hoomd-blue DISTVERSIONPREFIX= v -DISTVERSION= 3.0.1 +DISTVERSION= 3.1.0 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -26,7 +26,7 @@ GH_TUPLE= glotzerlab:upp11:0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360:glotzerlab_u glotzerlab:hipCUB:c70e19332a8402049b3359b409e50220a759c42d:glotzerlab_hipCUB/hoomd/extern/hipCUB \ mphowardlab:neighbor:ba0f06869b766066a7068852fa3b8c5fa746f71f:mphowardlab_neighbor/hoomd/extern/neighbor \ mphowardlab:hipper:b6da049a516ada03e4e1b66ca6b4c2c7c9668595:mphowardlab_hipper/hoomd/extern/hipper \ - glotzerlab:hoomd-examples:78174286427a2ec1c23e84015f7b4ba4f5f86d20:glotzerlab_hoomd_examples/sphinx-doc/tutorial \ + glotzerlab:hoomd-examples:78174286427a2ec1c23e84015f7b4ba4f5f86d20:glotzerlab_hoomd_examples/sphinx-doc/tutorial SHEBANG_GLOB= *.sh diff --git a/science/py-hoomd-blue/distinfo b/science/py-hoomd-blue/distinfo index 43236d619a7f..17a85229e805 100644 --- a/science/py-hoomd-blue/distinfo +++ b/science/py-hoomd-blue/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1649627643 -SHA256 (glotzerlab-hoomd-blue-v3.0.1_GH0.tar.gz) = 272cfc0862c47ae09c483a9b943676993bc7d21f492f0e47605ffdbaeb7f343f -SIZE (glotzerlab-hoomd-blue-v3.0.1_GH0.tar.gz) = 2755386 +TIMESTAMP = 1651170590 +SHA256 (glotzerlab-hoomd-blue-v3.1.0_GH0.tar.gz) = bbf602dca4a7ab94e07339b74df9f88eef0cc2487942b44e5f31581c3e77c7bb +SIZE (glotzerlab-hoomd-blue-v3.1.0_GH0.tar.gz) = 2781335 SHA256 (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 759695139bddae1d8a7cd52c967b856d6debf28fb37ea177f78c4434e2b210a8 SIZE (glotzerlab-upp11-0c1fb8dfb4bcdc1c5c4eff9165539b15e70c4360_GH0.tar.gz) = 21058 SHA256 (glotzerlab-nano-signal-slot-34223a4a7e97f8e114ef007e5360cf7a71265da3_GH0.tar.gz) = d15030482c82d9e4a99c2f67d8ef23b33cc318dd48ac0f8e804c6d4750f27ff4 diff --git a/science/py-hoomd-blue/pkg-plist b/science/py-hoomd-blue/pkg-plist index ecf44031a50f..b39ef9d91d26 100644 --- a/science/py-hoomd-blue/pkg-plist +++ b/science/py-hoomd-blue/pkg-plist @@ -77,8 +77,11 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_quick_compress.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_scale.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_shape.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_shape_updater.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_shape_utils.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_small_box_2d.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_small_box_3d.py +%%PYTHON_SITELIBDIR%%/hoomd/hpmc/shape_move.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/tune/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/tune/boxmc_move_size.py %%PYTHON_SITELIBDIR%%/hoomd/hpmc/tune/mc_move_tune.py @@ -592,6 +595,7 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeConvexPolyhedron.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeEllipsoid.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeFacetedEllipsoid.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeMoves.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapePolyhedron.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeSimplePolygon.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ShapeSphere.h @@ -605,6 +609,7 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterClustersGPUDepletants.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterMuVT.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterQuickCompress.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/UpdaterShape.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/XenoCollide2D.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/XenoCollide3D.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/modules.h @@ -615,12 +620,8 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ActiveForceConstraintComputeGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ActiveForceConstraintComputeGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/ActiveRotationalDiffusionUpdater.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllAnisoPairPotentials.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllBondPotentials.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllExternalPotentials.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllPairPotentials.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllSpecialPairPotentials.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AllTripletPotentials.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AlchemostatTwoStep.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AlchemyData.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPair.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPairGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/AnisoPotentialPairGPU.h @@ -647,8 +648,8 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairALJ.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairBuckingham.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDLVO.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDPDLJThermo.h -%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDPDThermo.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDPDThermoDPD.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDPDThermoLJ.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairDipole.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairEwald.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/EvaluatorPairExpandedLJ.h @@ -718,6 +719,8 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialExternalGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialExternalGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPair.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPairAlchemical.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPairAlchemicalNormalized.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPairDPDThermo.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPairDPDThermoGPU.cuh %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/PotentialPairDPDThermoGPU.h @@ -742,6 +745,7 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNPTMTKGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVE.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVEGPU.h +%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTAlchemy.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTMTK.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTMTKGPU.h %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLEBD.h @@ -788,6 +792,9 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/logging.py %%PYTHON_SITELIBDIR%%/hoomd/md/__init__.py %%PYTHON_SITELIBDIR%%/hoomd/md/_md%%PYTHON_EXT_SUFFIX%%.so +%%PYTHON_SITELIBDIR%%/hoomd/md/alchemy/__init__.py +%%PYTHON_SITELIBDIR%%/hoomd/md/alchemy/methods.py +%%PYTHON_SITELIBDIR%%/hoomd/md/alchemy/pair.py %%PYTHON_SITELIBDIR%%/hoomd/md/angle.py %%PYTHON_SITELIBDIR%%/hoomd/md/bond.py %%PYTHON_SITELIBDIR%%/hoomd/md/compute.py @@ -821,6 +828,7 @@ lib/cmake/hoomd/hoomd-targets.cmake %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/forces_and_energies.json %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_active.py %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_active_rotational_diffusion.py +%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_alchemostat.py %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_alj.py %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_angle.py %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_aniso_pair.py