From nobody Sat Dec 18 17:56:53 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id E8A1218EAF8B; Sat, 18 Dec 2021 17:56:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JGYT215PPz4hS6; Sat, 18 Dec 2021 17:56:54 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id DC6C513B51; Sat, 18 Dec 2021 17:56:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BIHurvN007405; Sat, 18 Dec 2021 17:56:53 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1BIHurcQ007404; Sat, 18 Dec 2021 17:56:53 GMT (envelope-from git) Date: Sat, 18 Dec 2021 17:56:53 GMT Message-Id: <202112181756.1BIHurcQ007404@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: d0228a8a5f1c - main - biology/samtools: Update to 1.14 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: d0228a8a5f1c2b80211af892f32847ff4edb241f Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1639850215; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=y4YNylgoOS77S9v5DXzWJ8QjxtKGIZ2kG0Vyygs2Rg0=; b=RVM3xU8PfM9SjlvM4Nt2mAJ7ZfIkS+n3KlSC+wTwfY6x0dRVPtSDa4JnkHt+qZbeUq8EQG ScGtsAMn/HJNu7Pwo/UageOI60d1riEnJGzIxgSk/qvBDiZO/FZOtmTL1niCrN2HLwU0qo lubmrWAkkA/yW/VmpqfLYEWxI5Sp7enYfKryvpN9AQA8qcjiehaEODb7hGCoNrgl9bqpZn fa2003rYYWgisy9hZb6FxBXIfmgFk6UxYUIbG+8tgEFIMwAIDcd8uhhoJcABbpGRacSgrY zN346j41albZHl4OXNDowkIkXRWi+MPMN5CI5vneXI/fqP877juLPPtm7KjQ7Q== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1639850215; a=rsa-sha256; cv=none; b=tx4VqLD8CxMnT8pFYBT7YNnUQGXpFPmmH10adJiMQ653r4Q59FTSRp8P3q4D8MvJoemj7J GtbDlOh432QnWxUOkifbhIDfaYkxH/DzhCEkBO1TiqR5wXFHkQKTJAOE58fZfCOWDyGS58 fglNZq3/cs93DZU9TZnWDMu1UwpQEs4TIHM+juzY3hTefhk6xw2TOsNb+gME6LT4l9OVHv EY2k9ZtZSxLrRkfNKdrnlh/Ck5u/g9Cu/bW2ROJSQsrIjcZp98RTK6vkLgnt9oIYzQtegI yzADG3OlthAXZFGY0zNYGCwNxHyMg3CSKztmpwu3P9zEiGV9ZzzfyxnX76yBcA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=d0228a8a5f1c2b80211af892f32847ff4edb241f commit d0228a8a5f1c2b80211af892f32847ff4edb241f Author: Jason W. Bacon AuthorDate: 2021-12-18 17:54:20 +0000 Commit: Jason W. Bacon CommitDate: 2021-12-18 17:56:51 +0000 biology/samtools: Update to 1.14 Several enhancements and minor bug fixes Changes: https://github.com/samtools/samtools/tags --- biology/samtools/Makefile | 2 +- biology/samtools/distinfo | 6 +++--- biology/samtools/pkg-plist | 1 + 3 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 46edd3abaed1..59b08a5aab87 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright PORTNAME= samtools -DISTVERSION= 1.13 +DISTVERSION= 1.14 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 05b964d202a9..eedab9c66fd4 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1626039854 -SHA256 (samtools-samtools-1.13_GH0.tar.gz) = 21621a2dd6f31b00c9184d31566e73a1c7fc0c1c2de62db125848fbdbc81448f -SIZE (samtools-samtools-1.13_GH0.tar.gz) = 4550467 +TIMESTAMP = 1639702435 +SHA256 (samtools-samtools-1.14_GH0.tar.gz) = 055a19dfa0ebdc9a84ecbaa55f421854f2b87ec7616fb83add3cbf66aa13fc35 +SIZE (samtools-samtools-1.14_GH0.tar.gz) = 4933354 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index 8bfb1cbe8be8..e69a2e244fb7 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -48,6 +48,7 @@ man/man1/samtools-phase.1.gz man/man1/samtools-quickcheck.1.gz man/man1/samtools-reheader.1.gz man/man1/samtools-rmdup.1.gz +man/man1/samtools-samples.1.gz man/man1/samtools-sort.1.gz man/man1/samtools-split.1.gz man/man1/samtools-stats.1.gz