[package - main-powerpc64le-default][biology/mmseqs2] Failed for MMseqs2-13.45111_2 in build
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Date: Sat, 17 Feb 2024 16:15:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pfcb5f1215dc0_s4347ef6050/logs/MMseqs2-13.45111_2.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pfcb5f1215dc0_s4347ef6050
Log:
=>> Building biology/mmseqs2
build started at Sat Feb 17 16:09:15 UTC 2024
port directory: /usr/ports/biology/mmseqs2
package name: MMseqs2-13.45111_2
building for: FreeBSD main-powerpc64le-default-job-05 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1126 Dec 29 2022 /usr/ports/biology/mmseqs2/Makefile
Ports top last git commit: fcb5f1215d
Ports top unclean checkout: no
Port dir last git commit: 687b6f92f4
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500000
Jail OSVERSION: 1500008
Job Id: 05
!!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-powerpc64le-default-job-05] Installing pkg-1.20.9_1...
[main-powerpc64le-default-job-05] Extracting pkg-1.20.9_1: .......... done
===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of MMseqs2-13.45111_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
=> SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
===> Extracting for MMseqs2-13.45111_2
=> SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for MMseqs2-13.45111_2
===> Applying FreeBSD patches for MMseqs2-13.45111_2 from /usr/ports/biology/mmseqs2/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> MMseqs2-13.45111_2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.28.3.pkg
[main-powerpc64le-default-job-05] Installing cmake-core-3.28.3...
[main-powerpc64le-default-job-05] `-- Installing expat-2.5.0_1...
[main-powerpc64le-default-job-05] `-- Extracting expat-2.5.0_1: .......... done
[main-powerpc64le-default-job-05] `-- Installing jsoncpp-1.9.5...
[main-powerpc64le-default-job-05] `-- Extracting jsoncpp-1.9.5: .......... done
[main-powerpc64le-default-job-05] `-- Installing libuv-1.48.0...
[main-powerpc64le-default-job-05] `-- Extracting libuv-1.48.0: .......... done
[main-powerpc64le-default-job-05] `-- Installing rhash-1.4.4_1...
[main-powerpc64le-default-job-05] | `-- Installing gettext-runtime-0.22.3_1...
[main-powerpc64le-default-job-05] | | `-- Installing indexinfo-0.3.1...
[main-powerpc64le-default-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[main-powerpc64le-default-job-05] | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-powerpc64le-default-job-05] `-- Extracting rhash-1.4.4_1: .......... done
[main-powerpc64le-default-job-05] Extracting cmake-core-3.28.3: .......... done
<snip>
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/clustering/ClusteringAlgorithms.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/clustering/ClusteringAlgorithms.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
6 warnings generated.
[ 35% 82/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Applica
tion.cpp.o -c /wrkdirs/usr/ports/biology/mms!
eqs2/work/MMseqs2-13-45111/src/commons/Application.cpp
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Application.cpp:4:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment/DistanceCalculator.h:8:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Application.cpp:4:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment/DistanceCalculator.h:8:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
6 warnings generated.
[ 35% 83/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -
c /wrkdirs/usr/ports/biology/mmseqs2/work/MM!
seqs2-13-45111/src/commons/Command.cpp
[ 35% 84/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatri
x.cpp.o -c /wrkdirs/usr/ports/biology/mmseqs!
2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp:4:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp:4:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
6 warnings generated.
[ 36% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Com
mandCaller.cpp.o -c /wrkdirs/usr/ports/biolo!
gy/mmseqs2/work/MMseqs2-13-45111/src/commons/CommandCaller.cpp
FAILED: src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o
/usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45
111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp
.o -c /wrkdirs/usr/ports/biology/mmseqs2/wor!
k/MMseqs2-13-45111/src/commons/CommandCaller.cpp
Attributes 'zeroext and signext' are incompatible!
ptr @omp_get_proc_bind
fatal error: error in backend: Broken module found, compilation aborted!
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmse
qs2/work/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/common
s/CommandCaller.cpp.o -c /wrkdirs/usr/ports/!
biology/mmseqs2/work/MMseqs2-13-45111/src/commons/CommandCaller.cpp
1. <eof> parser at end of file
2. Code generation
#0 0x00000000161d1aec (/usr/bin/c+++0x161d1aec)
#1 0x00000000161cf330 (/usr/bin/c+++0x161cf330)
#2 0x000000001617d254 (/usr/bin/c+++0x1617d254)
#3 0x000000001617d1bc (/usr/bin/c+++0x1617d1bc)
#4 0x00000000161b72e0 (/usr/bin/c+++0x161b72e0)
#5 0x0000000011f79de0 (/usr/bin/c+++0x11f79de0)
#6 0x0000000016188c58 (/usr/bin/c+++0x16188c58)
#7 0x0000000016188aec (/usr/bin/c+++0x16188aec)
#8 0x0000000015c2a08c (/usr/bin/c+++0x15c2a08c)
#9 0x0000000015b83068 (/usr/bin/c+++0x15b83068)
#10 0x0000000015b7b2c8 (/usr/bin/c+++0x15b7b2c8)
#11 0x0000000012bef114 (/usr/bin/c+++0x12bef114)
#12 0x0000000012fed098 (/usr/bin/c+++0x12fed098)
#13 0x000000001383b760 (/usr/bin/c+++0x1383b760)
#14 0x0000000012ed3a20 (/usr/bin/c+++0x12ed3a20)
#15 0x0000000012fea4dc (/usr/bin/c+++0x12fea4dc)
#16 0x0000000012ed301c (/usr/bin/c+++0x12ed301c)
#17 0x0000000012e3e7c0 (/usr/bin/c+++0x12e3e7c0)
#18 0x0000000012fe3790 (/usr/bin/c+++0x12fe3790)
#19 0x0000000011f79378 (/usr/bin/c+++0x11f79378)
#20 0x0000000011f8ad58 (/usr/bin/c+++0x11f8ad58)
#21 0x0000000012c9bdf8 (/usr/bin/c+++0x12c9bdf8)
#22 0x000000001617d118 (/usr/bin/c+++0x1617d118)
#23 0x0000000012c9afe4 (/usr/bin/c+++0x12c9afe4)
#24 0x0000000012c51c98 (/usr/bin/c+++0x12c51c98)
#25 0x0000000012c5205c (/usr/bin/c+++0x12c5205c)
#26 0x0000000012c71714 (/usr/bin/c+++0x12c71714)
#27 0x0000000011f8a44c (/usr/bin/c+++0x11f8a44c)
#28 0x0000000011f86d54 (/usr/bin/c+++0x11f86d54)
#29 0x0000000818a784e8 __libc_start1 (/lib/libc.so.7+0x9a4e8)
#30 0x0000000011f78a30 (/usr/bin/c+++0x11f78a30)
c++: error: clang frontend command failed with exit code 70 (use -v to see invocation)
FreeBSD clang version 17.0.6 (https://github.com/llvm/llvm-project.git llvmorg-17.0.6-0-g6009708b4367)
Target: powerpc64le-unknown-freebsd15.0
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/CommandCaller-691142.cpp
c++: note: diagnostic msg: /tmp/CommandCaller-691142.sh
c++: note: diagnostic msg:
********************
[ 36% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.
o -c /wrkdirs/usr/ports/biology/mmseqs2/work!
/MMseqs2-13-45111/src/commons/DBConcat.cpp
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
6 warnings generated.
[ 37% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.
o -c /wrkdirs/usr/ports/biology/mmseqs2/work!
/MMseqs2-13-45111/src/commons/DBReader.cpp
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
6 warnings generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/mmseqs2