[package - main-amd64-default][math/R-cran-RHmm] Failed for R-cran-RHmm-2.0.3_11 in stage
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Date: Wed, 03 May 2023 04:43:44 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: tota@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/pdf5b273c8e36_s83d5725005/logs/R-cran-RHmm-2.0.3_11.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=pdf5b273c8e36_s83d5725005
Log:
=>> Building math/R-cran-RHmm
build started at Wed May 3 04:43:33 UTC 2023
port directory: /usr/ports/math/R-cran-RHmm
package name: R-cran-RHmm-2.0.3_11
building for: FreeBSD main-amd64-default-job-05 14.0-CURRENT FreeBSD 14.0-CURRENT 1400088 amd64
maintained by: tota@FreeBSD.org
Makefile ident:
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Job Id: 05
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!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv2 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-amd64-default-job-05] Installing pkg-1.19.1_1...
[main-amd64-default-job-05] Extracting pkg-1.19.1_1: .......... done
===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-RHmm-2.0.3_11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-RHmm-2.0.3_11 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-RHmm-2.0.3_11 for building
=> SHA256 Checksum OK for RHmm_2.0.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-RHmm-2.0.3_11 for building
===> Extracting for R-cran-RHmm-2.0.3_11
=> SHA256 Checksum OK for RHmm_2.0.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-RHmm-2.0.3_11
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/bin/R - not found
===> Installing existing package /packages/All/R-4.3.0.pkg
[main-amd64-default-job-05] Installing R-4.3.0...
[main-amd64-default-job-05] `-- Installing cairo-1.17.4_2,3...
[main-amd64-default-job-05] | `-- Installing fontconfig-2.14.2,1...
<snip>
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from python39-3.9.16_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
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--
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=====
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For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
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=====
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This package installs a script named dvipdf that depends on dvips. If you
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=====
Message from libthai-0.1.29:
--
===> NOTICE:
The libthai port currently does not have a maintainer. As a result, it is
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=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
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Load "freetype"
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Note: your X Windows configuration file is typically /etc/X11/XF86Config
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===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/bin/R - found
===> Returning to build of R-cran-RHmm-2.0.3_11
===> R-cran-RHmm-2.0.3_11 depends on executable: gfortran12 - found
===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-RHmm-2.0.3_11
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-RHmm-2.0.3_11 depends on file: /usr/local/bin/R - found
===> R-cran-RHmm-2.0.3_11 depends on executable: gfortran12 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-RHmm-2.0.3_11
===> Generating temporary packing list
* installing *source* package 'RHmm' ...
** package 'RHmm' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)'
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-RHmm/work/RHmm/src'
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -w -D_RDLL_ -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c Kmeans.cpp -o Kmeans.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -w -D_RDLL_ -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c LogProb.cpp -o LogProb.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -w -D_RDLL_ -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c Main.cpp -o Main.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -w -D_RDLL_ -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c MultivariateNormalUtil.cpp -o MultivariateNormalUtil.o
MultivariateNormalUtil.cpp:20:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:20:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:20:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:39:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:39:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:39:1: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
register uint i, j, t ;
^~~~~~~~~
MultivariateNormalUtil.cpp:63:7: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint i = 0 ; i < mySize ; i++)
^~~~~~~~~
MultivariateNormalUtil.cpp:64:8: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint j = i ; j < mySize ; j++)
^~~~~~~~~
MultivariateNormalUtil.cpp:69:9: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint p = 0 ; p < mySize ; p++)
^~~~~~~~~
MultivariateNormalUtil.cpp:70:10: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint q = p ; q < mySize ; q++)
^~~~~~~~~
MultivariateNormalUtil.cpp:87:7: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint i = 0 ; i < myNCol ; i++)
^~~~~~~~~
MultivariateNormalUtil.cpp:88:9: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
{ for (register uint j = i ; j < myNCol ; j++)
^~~~~~~~~
MultivariateNormalUtil.cpp:142:8: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register int i =-1 ; i < 2 ; i++)
^~~~~~~~~
MultivariateNormalUtil.cpp:143:9: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register int j = -1 ; j < 2 ; j++)
^~~~~~~~~
MultivariateNormalUtil.cpp:152:7: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint i = 0 ; i < myNCol ; i++)
^~~~~~~~~
MultivariateNormalUtil.cpp:153:9: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
{ for (register uint j = i ; j < myNCol ; j++)
^~~~~~~~~
MultivariateNormalUtil.cpp:157:9: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint p = 0 ; p < myNCol ; p++)
^~~~~~~~~
MultivariateNormalUtil.cpp:158:11: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
{ for (register uint q = p ; q < myNCol ; q++)
^~~~~~~~~
MultivariateNormalUtil.cpp:161:11: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
for (register uint r = 0 ; r < 9 ; r++)
^~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:198: MultivariateNormalUtil.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-RHmm/work/RHmm/src'
ERROR: compilation failed for package 'RHmm'
* removing '/wrkdirs/usr/ports/math/R-cran-RHmm/work/stage/usr/local/lib/R/library/RHmm'
*** Error code 1
Stop.
make: stopped in /usr/ports/math/R-cran-RHmm