[package - 124i386-quarterly][science/py-pymatgen] Failed for py39-pymatgen-2022.7.19_1 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 22 Aug 2023 15:24:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/py39-pymatgen-2022.7.19_1.log
Build URL:      https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40
Log:

=>> Building science/py-pymatgen
build started at Tue Aug 22 15:24:06 UTC 2023
port directory: /usr/ports/science/py-pymatgen
package name: py39-pymatgen-2022.7.19_1
building for: FreeBSD 124i386-quarterly-job-01 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
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Job Id: 01

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yuri@FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-pymatgen-2022.7.19_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-01] Installing pkg-1.19.2...
[124i386-quarterly-job-01] Extracting pkg-1.19.2: .......... done
===>   py39-pymatgen-2022.7.19_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-pymatgen-2022.7.19_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pymatgen-2022.7.19_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pymatgen-2022.7.19_1 for building
=> SHA256 Checksum OK for pymatgen-2022.7.19.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pymatgen-2022.7.19_1 for building
===>  Extracting for py39-pymatgen-2022.7.19_1
=> SHA256 Checksum OK for pymatgen-2022.7.19.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-pymatgen-2022.7.19_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-pymatgen-2022.7.19_1 depends on package: py39-numpy>=1.16,1<1.25,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg
[124i386-quarterly-job-01] Installing py39-numpy-1.24.1_4,1...
[124i386-quarterly-job-01] `-- Installing gcc12-12.2.0_6...
[124i386-quarterly-job-01] |   `-- Installing binutils-2.40_4,1...
[124i386-quarterly-job-01] |   | `-- Installing gettext-runtime-0.21.1...
[124i386-quarterly-job-01] |   |   `-- Installing indexinfo-0.3.1...
[124i386-quarterly-job-01] |   |   `-- Extracting indexinfo-0.3.1: .... done
[124i386-quarterly-job-01] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[124i386-quarterly-job-01] |   | `-- Installing zstd-1.5.5...
[124i386-quarterly-job-01] |   |   `-- Installing liblz4-1.9.4,1...
[124i386-quarterly-job-01] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[124i386-quarterly-job-01] |   | `-- Extracting zstd-1.5.5: .......... done
<snip>
copying pymatgen/util/structures/SiO2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/NaFePO4.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Graphite.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Sn.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/TiO2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/K2O2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Li10GeP2S12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/BaNiO3.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/TlBiSe2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/structures/Li2O.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util/structures
copying pymatgen/util/plotly_pd_layouts.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util
copying pymatgen/util/plotly_chempot_layouts.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util
copying pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/util
copying pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/op_params.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/cn_opt_params.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/icsd_bv.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/bvparam_1991.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/ionic_radii.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/aflow_prototypes.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/hhi_data.csv -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/analysis/costdb_elements.csv -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis
copying pymatgen/core/py.typed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/reconstructions_archive.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/periodic_table.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/bond_lengths.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/libxc_docs.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/quad_data.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/core/func_groups.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/core
copying pymatgen/command_line/OxideTersoffPotentials -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/command_line
copying pymatgen/symmetry/symm_data.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/symmetry
copying pymatgen/symmetry/symm_ops.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/symmetry
copying pymatgen/symmetry/symm_ops.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/symmetry
copying pymatgen/symmetry/symm_data.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/symmetry
copying pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/symmetry
copying pymatgen/entries/exp_compounds.json.gz -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries
copying pymatgen/entries/calc_compounds.json.gz -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries
copying pymatgen/entries/MP2020Compatibility.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries
copying pymatgen/entries/MPCompatibility.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries
copying pymatgen/entries/MITCompatibility.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries/data
copying pymatgen/entries/data/g_els.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries/data
copying pymatgen/entries/data/nist_gas_gf.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/entries/data
copying pymatgen/vis/ElementColorSchemes.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/vis
copying pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/magnetism
copying pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/structure_prediction
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/structure_prediction/data
copying pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/structure_prediction/data
copying pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/structure_prediction/data
copying pymatgen/analysis/solar/am1.5G.dat -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/solar
copying pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/diffraction
copying pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/diffraction
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/strategy_files
copying pymatgen/analysis/chemenv/coordination_environments/strategy_files/ImprovedConfidenceCutoffDefaultParameters.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/analysis/chemenv/coordination_environments/strategy_files
copying pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lammps
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lammps/templates
copying pymatgen/io/lammps/templates/md.txt -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lammps/templates
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lobster/lobster_basis
copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lobster/lobster_basis
copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lobster/lobster_basis
copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/lobster/lobster_basis
copying pymatgen/io/cp2k/settings.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/cp2k
copying pymatgen/io/feff/MPELNESSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/feff
copying pymatgen/io/feff/MPXANESSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/feff
copying pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/feff
copying pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/feff
copying pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/incar_parameters.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
copying pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/io/vasp
running build_ext
cythoning pymatgen/optimization/linear_assignment.pyx to pymatgen/optimization/linear_assignment.c
cythoning pymatgen/util/coord_cython.pyx to pymatgen/util/coord_cython.c
warning: pymatgen/util/coord_cython.pyx:217:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
warning: pymatgen/util/coord_cython.pyx:266:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
cythoning pymatgen/optimization/neighbors.pyx to pymatgen/optimization/neighbors.c
building 'pymatgen.optimization.linear_assignment' extension
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/optimization
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c pymatgen/optimization/linear_assignment.c -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/optimization/linear_assignment.o
In file included from pymatgen/optimization/linear_assignment.c:750:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940:
/usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0.	Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c pymatgen/optimization/linear_assignment.c -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/pymatgen/optimization/linear_assignment.o
1.	<eof> parser at end of file
2.	Code generation
3.	Running pass 'Function Pass Manager' on module 'pymatgen/optimization/linear_assignment.c'.
4.	Running pass 'X86 DAG->DAG Instruction Selection' on function '@PyInit_linear_assignment'
#0 0x049f5de4 (/usr/bin/cc+0x49f5de4)
#1 0x049f62c0 (/usr/bin/cc+0x49f62c0)
#2 0x049f40ae (/usr/bin/cc+0x49f40ae)
#3 0x049f8103 (/usr/bin/cc+0x49f8103)
#4 0x05b70969 (/usr/bin/cc+0x5b70969)
cc: error: clang frontend command failed with exit code 139 (use -v to see invocation)
FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303)
Target: i386-unknown-freebsd12.4
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg: 
********************

PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/linear_assignment-f81e04.c
cc: note: diagnostic msg: /tmp/linear_assignment-f81e04.sh
cc: note: diagnostic msg: 

********************
error: command '/usr/bin/cc' failed with exit code 139
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-pymatgen