[package - 130i386-default][biology/kmcp] Failed for kmcp-0.8.2 in build
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Date: Tue, 09 Aug 2022 21:10:13 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy15.nyi.freebsd.org/data/130i386-default/240569d0a2e9/logs/kmcp-0.8.2.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=130i386-default&build=240569d0a2e9
Log:
=>> Building biology/kmcp
build started at Tue Aug 9 21:09:44 UTC 2022
port directory: /usr/ports/biology/kmcp
package name: kmcp-0.8.2
building for: FreeBSD 130i386-default-job-05 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 i386
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1300139
Job Id: 05
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
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UNAME_v=FreeBSD 13.0-RELEASE-p11
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MAIL=/var/mail/root
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POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/130i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m
0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/kmcp" EXAMPLESDIR="share/examples/kmcp" DATADIR="share/kmcp" WWWDIR="www/kmcp" ETCDIR="etc/kmcp"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/kmcp DOCSDIR=/usr/local/share/doc/kmcp EXAMPLESDIR=/usr/local/share/examples/kmcp WWWDIR=/usr/local/www/kmcp ETCDIR=/usr/local/etc/kmcp
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
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ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-RELEASE-p11
OSREL=13.0
OSVERSION=1300139
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[130i386-default-job-05] Installing pkg-1.18.4...
[130i386-default-job-05] Extracting pkg-1.18.4: .......... done
===> kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of kmcp-0.8.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
=> shenwei356-kmcp-v0.8.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz
fetch: https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz: size of remote file is not known
shenwei356-kmcp-v0.8.2_GH0.tar.gz 16 MB 16 MBps 01s
=> clausecker-pospop-677120eb417c_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz
fetch: https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz: size of remote file is not known
clausecker-pospop-677120eb417c_GH0.tar.gz 9038 B 6349 kBps 00s
=> grailbio-base-v0.0.10_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz
fetch: https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz: size of remote file is not known
grailbio-base-v0.0.10_GH0.tar.gz 592 kB 6811 kBps 00s
=> iafan-cwalk-586a8832a711_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz
fetch: https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz: size of remote file is not known
iafan-cwalk-586a8832a711_GH0.tar.gz 5497 B 8815 kBps 00s
=> klauspost-compress-v1.15.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz
fetch: https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz: size of remote file is not known
klauspost-compress-v1.15.0_GH0.tar.gz 14 MB 20 MBps 01s
=> shenwei356-bio-v0.7.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/shenwei356/bio/tar.gz/v0.7.0?dummy=/shenwei356-bio-v0.7.0_GH0.tar.gz
fetch: https://codeload.github.com/shenwei356/bio/tar.gz/v0.7.0?dummy=/shenwei356-bio-v0.7.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/shenwei356/bio/tar.gz/v0.7.0?dummy=/shenwei356-bio-v0.7.0_GH0.tar.gz: size of remote file is not known
shenwei356-bio-v0.7.0_GH0.tar.gz 225 kB 6851 kBps 00s
=> shenwei356-breader-v0.3.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/shenwei356/breader/tar.gz/v0.3.1?dummy=/shenwei356-breader-v0.3.1_GH0.tar.gz
fetch: https://codeload.github.com/shenwei356/breader/tar.gz/v0.3.1?dummy=/shenwei356-breader-v0.3.1_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/shenwei356/breader/tar.gz/v0.3.1?dummy=/shenwei356-breader-v0.3.1_GH0.tar.gz: size of remote file is not known
shenwei356-breader-v0.3.1_GH0.tar.gz 5347 B 9359 kBps 00s
=> shenwei356-kmers-v0.1.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
<snip>
vendor/golang.org/x/crypto/internal/subtle
internal/goos
github.com/VividCortex/ewma
crypto/internal/boring/sig
internal/itoa
golang.org/x/sys/internal/unsafeheader
unicode/utf16
vendor/golang.org/x/crypto/cryptobyte/asn1
encoding
internal/nettrace
crypto/subtle
github.com/ulikunitz/xz/internal/hash
math/bits
runtime/internal/atomic
internal/goexperiment
internal/unsafeheader
container/list
internal/goarch
internal/cpu
unicode/utf8
sync/atomic
github.com/shenwei356/pand
unicode
internal/race
internal/abi
runtime/internal/math
runtime/internal/sys
# github.com/shenwei356/pand
vendor/github.com/shenwei356/pand/dispatch.go:19:20: undefined: andInplaceFuncs
vendor/github.com/shenwei356/pand/dispatch.go:29:20: undefined: andFuncs
github.com/rivo/uniseg
math
internal/bytealg
runtime
github.com/shenwei356/util/math
github.com/klauspost/compress
github.com/vbauerster/mpb/v5/internal
internal/reflectlite
sync
internal/testlog
internal/singleflight
math/rand
runtime/cgo
errors
sort
internal/oserror
path
io
vendor/golang.org/x/net/dns/dnsmessage
strconv
crypto/internal/nistec/fiat
syscall
container/heap
crypto/internal/randutil
hash
bytes
strings
hash/crc32
hash/crc64
github.com/shenwei356/kmers
vendor/golang.org/x/text/transform
github.com/twotwotwo/sorts
crypto
crypto/rc4
reflect
bufio
net/http/internal/ascii
regexp/syntax
github.com/twotwotwo/sorts/sortutil
github.com/shenwei356/util/stats
internal/syscall/execenv
internal/syscall/unix
time
regexp
crypto/internal/nistec
context
io/fs
internal/poll
github.com/acarl005/stripansi
github.com/shenwei356/natsort
os
internal/fmtsort
encoding/binary
internal/godebug
io/ioutil
golang.org/x/sys/cpu
path/filepath
github.com/mattn/go-runewidth
fmt
vendor/golang.org/x/net/route
internal/intern
github.com/zeebo/wyhash
encoding/base64
github.com/klauspost/compress/internal/snapref
crypto/internal/edwards25519/field
github.com/klauspost/compress/zstd/internal/xxhash
vendor/golang.org/x/crypto/internal/poly1305
crypto/md5
crypto/cipher
vendor/golang.org/x/crypto/curve25519/internal/field
github.com/zeebo/xxh3
net/netip
encoding/pem
github.com/clausecker/pospop
crypto/internal/edwards25519
os/exec
crypto/internal/boring
vendor/golang.org/x/crypto/chacha20
crypto/des
crypto/sha256
crypto/sha512
crypto/aes
crypto/hmac
crypto/sha1
vendor/golang.org/x/crypto/chacha20poly1305
vendor/golang.org/x/crypto/hkdf
net
github.com/mitchellh/go-homedir
github.com/iafan/cwalk
github.com/pkg/errors
github.com/ulikunitz/xz/internal/xlog
net/url
net/http/internal
github.com/shenwei356/kmcp/kmcp/cmd/index
mime/quotedprintable
os/user
github.com/shenwei356/util/byteutil
golang.org/x/sys/unix
mime
github.com/will-rowe/nthash
vendor/golang.org/x/crypto/curve25519
encoding/hex
github.com/klauspost/compress/fse
log
runtime/debug
github.com/shenwei356/util/bytesize
vendor/golang.org/x/net/http2/hpack
encoding/json
encoding/csv
compress/flate
math/big
github.com/shenwei356/unik/v5
flag
github.com/tatsushid/go-prettytable
github.com/vbauerster/mpb/v5/decor
vendor/golang.org/x/text/unicode/norm
github.com/shenwei356/util/pathutil
text/template/parse
github.com/shenwei356/util/stringutil
github.com/shenwei356/bio/seq
gopkg.in/yaml.v2
github.com/ulikunitz/xz/lzma
vendor/golang.org/x/text/unicode/bidi
github.com/klauspost/compress/huff0
github.com/shenwei356/bio/sketches
vendor/golang.org/x/text/secure/bidirule
compress/gzip
github.com/klauspost/compress/flate
text/template
github.com/ulikunitz/xz
github.com/edsrzf/mmap-go
github.com/mattn/go-isatty
github.com/vbauerster/mpb/v5/cwriter
github.com/mattn/go-colorable
github.com/vbauerster/mpb/v5
vendor/golang.org/x/net/idna
github.com/dustin/go-humanize
crypto/internal/boring/bbig
crypto/rand
crypto/elliptic
encoding/asn1
crypto/dsa
crypto/ed25519
crypto/rsa
github.com/klauspost/compress/zstd
crypto/x509/pkix
vendor/golang.org/x/crypto/cryptobyte
github.com/klauspost/pgzip
crypto/ecdsa
vendor/golang.org/x/net/http/httpproxy
log/syslog
net/textproto
crypto/x509
github.com/spf13/pflag
github.com/shenwei356/go-logging
vendor/golang.org/x/net/http/httpguts
mime/multipart
crypto/tls
github.com/spf13/cobra
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/taxdump
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/util/cliutil
*** Error code 2
Stop.
make: stopped in /usr/ports/biology/kmcp