[package - 130releng-armv6-quarterly][biology/emboss] Failed for emboss-6.6.0_4 in package/timeout

From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 20 Jun 2021 23:16:50 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     wen@FreeBSD.org
Log URL:        http://beefy8.nyi.freebsd.org/data/130releng-armv6-quarterly/711a4ba94c32/logs/emboss-6.6.0_4.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=130releng-armv6-quarterly&build=711a4ba94c32
Log:

=>> Building biology/emboss
build started at Sun Jun 20 19:08:05 UTC 2021
port directory: /usr/ports/biology/emboss
package name: emboss-6.6.0_4
building for: FreeBSD 130releng-armv6-quarterly-job-12 13.0-RELEASE-p2 FreeBSD 13.0-RELEASE-p2 1300139 arm
maintained by: wen@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1300139
Job Id: 12




!!! Jail is newer than host. (Jail: 1300139, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for emboss-6.6.0_4:
     DOCS=on: Build and/or install documentation
     X11=on: X11 (graphics) support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
wen@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work  HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work  HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-DLIBICONV_PLUG"  LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing  -DLIBICONV_PLUG "  MANPREFIX="/usr/local/emboss" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL
 _MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local/emboss LIB32DIR=lib DOCSDIR="share/EMBOSS/doc"  EXAMPLESDIR="share/examples/emboss"  DATADIR="share/EMBOSS"  WWWDIR="www/emboss"  ETCDIR="etc/emboss"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local  DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss  WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss
--End SUB_LIST--

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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   emboss-6.6.0_4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-armv6-quarterly-job-12] Installing pkg-1.16.3...
[130releng-armv6-quarterly-job-12] Extracting pkg-1.16.3: .......... done
===>   emboss-6.6.0_4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of emboss-6.6.0_4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by emboss-6.6.0_4 for building
<snip>
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd'
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax'
gmake[8]: Nothing to be done for 'all-am'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax'
Making all in nucleus
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus'
gmake[7]: Nothing to be done for 'all'.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus'
Making all in emboss
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
Making all in acd
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd'
Making all in data
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
Making all in AAINDEX
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX'
Making all in CODONS
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS'
Making all in JASPAR_CNE
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE'
Making all in JASPAR_CORE
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE'
Making all in JASPAR_FAM
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM'
Making all in JASPAR_PBM
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM'
Making all in JASPAR_PBM_HLH
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH'
Making all in JASPAR_PBM_HOMEO
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO'
Making all in JASPAR_PHYLOFACTS
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS'
Making all in JASPAR_POLII
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII'
Making all in JASPAR_SPLICE
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE'
Making all in OBO
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO'
Making all in PRINTS
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS'
Making all in PROSITE
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE'
Making all in REBASE
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE'
Making all in TAXONOMY
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY'
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
gmake[9]: Nothing to be done for 'all-am'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
Making all in index
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index'
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
gmake[8]: Nothing to be done for 'all-am'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
Making all in test
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
Making all in data
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data'
Making all in embl
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl'
Making all in genbank
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank'
Making all in pir
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir'
Making all in swiss
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss'
Making all in swnew
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew'
Making all in testdb
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb'
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
gmake[8]: Nothing to be done for 'all-am'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
Making all in doc
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
Making all in manuals
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals'
Making all in programs
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
Making all in html
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html'
Making all in text
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text'
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
gmake[9]: Nothing to be done for 'all-am'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
Making all in tutorials
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials'
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
gmake[8]: Nothing to be done for 'all-am'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
Making all in jemboss
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
Making all in images
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images'
Making all in lib
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
Making all in axis
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis'
gmake[9]: Nothing to be done for 'all'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis'
gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
gmake[9]: Nothing to be done for 'all-am'.
gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
Making all in resources
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources'
Making all in utils
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils'
gmake[8]: Nothing to be done for 'all'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils'
gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[8]: Nothing to be done for 'all-am'.
gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[7]: Nothing to be done for 'all-am'.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[5]: Nothing to be done for 'install-data-am'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
install  -m 0644 /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/emboss.default.template /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS
====> Compressing man pages (compress-man)
===>   Installing ldconfig configuration file
===========================================================================
=======================<phase: package        >============================
===>  Building package for emboss-6.6.0_4
=>> Killing timed out build after 7200 seconds