git: 59bdd5ade746 - main - biology/minimap2: Update to 2.27

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=59bdd5ade7461f7925af1ad1ae2f2a8cb90a848f

commit 59bdd5ade7461f7925af1ad1ae2f2a8cb90a848f
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-03-13 13:44:27 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-03-13 13:44:27 +0000

    biology/minimap2: Update to 2.27
    
    Several new features and a few bug fixes
    Changes: https://github.com/lh3/minimap2/releases
    
    Reported by: portscout
---
 biology/minimap2/Makefile                   | 3 +--
 biology/minimap2/distinfo                   | 6 +++---
 biology/minimap2/files/patch-Makefile.simde | 6 +++---
 biology/minimap2/pkg-plist                  | 2 +-
 4 files changed, 8 insertions(+), 9 deletions(-)

diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile
index 2ab83948882d..d403413cc324 100644
--- a/biology/minimap2/Makefile
+++ b/biology/minimap2/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=		minimap2
 DISTVERSIONPREFIX=	v
-DISTVERSION=		2.25
-PORTREVISION=		1
+DISTVERSION=		2.27
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo
index 7c79ce9501e2..5a1bf73dfa7d 100644
--- a/biology/minimap2/distinfo
+++ b/biology/minimap2/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1682729894
-SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38
-SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574
+TIMESTAMP = 1710332275
+SHA256 (lh3-minimap2-v2.27_GH0.tar.gz) = ca9ceb07e3b388858ebc2d7d91a6c74e996659402d16aa759ecedd63588b1ef7
+SIZE (lh3-minimap2-v2.27_GH0.tar.gz) = 259736
diff --git a/biology/minimap2/files/patch-Makefile.simde b/biology/minimap2/files/patch-Makefile.simde
index faef217fbdab..5d5e0ccf482c 100644
--- a/biology/minimap2/files/patch-Makefile.simde
+++ b/biology/minimap2/files/patch-Makefile.simde
@@ -1,4 +1,4 @@
---- Makefile.simde.orig	2023-04-25 16:44:52 UTC
+--- Makefile.simde.orig	2021-11-18 22:11:48 UTC
 +++ Makefile.simde
 @@ -1,13 +1,26 @@
 -CFLAGS=		-g -Wall -O2 -Wc++-compat #-Wextra
@@ -21,7 +21,7 @@
  LIBS=		-lm -lz -lpthread
  
 +PREFIX?=	/usr/local
-+MAN1DIR?=	${PREFIX}/share/man/man1
++MAN1DIR?=	${PREFIX}/man/man1
 +DATADIR?=	${PREFIX}/share/minimap2
  
 +MKDIR?=		mkdir
@@ -32,7 +32,7 @@
  ifneq ($(arm_neon),) # if arm_neon is defined
  ifeq ($(aarch64),)   #if aarch64 is not defined
  	CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
-@@ -26,7 +39,7 @@ endif
+@@ -26,7 +39,7 @@ ifneq ($(tsan),)
  	LIBS+=-fsanitize=thread
  endif
  
diff --git a/biology/minimap2/pkg-plist b/biology/minimap2/pkg-plist
index 742d1eb1b3f7..1d11d4c99c2f 100644
--- a/biology/minimap2/pkg-plist
+++ b/biology/minimap2/pkg-plist
@@ -1,7 +1,7 @@
 bin/minimap2
 bin/minimap2-lite
 bin/sdust
-share/man/man1/minimap2.1.gz
+man/man1/minimap2.1.gz
 %%DATADIR%%/test/MT-human.fa
 %%DATADIR%%/test/MT-orang.fa
 %%DATADIR%%/test/q-inv.fa